Non-Coding RNA Search

rpigcf0_003921.y1

Sequence:


               
               ACTCAAGTTTTTGTTGGAAGAAAATGTTCCAGCTGCACCCATGCTCCACCCCTGCCAACA
TATTCTGGGACCTGCGAGCACACTCGCTTGTGGACACACACGGGCTCATGCGTGCACGCA
CACACACACACACACACACACACACACCCATCCCATTTCTTCAGCAGCCCTGGTGTCTCT
GCTCCATTTTATTAAAGCAGAAAGCAGTGACAATTATTTTCATAATGAACTGGCTCTTCA
AATTAATGCCAATTACACTATGCAATCATGATTAAGATTATGCATTAATCAACGGTGCCA
ACCTACTTATTAGCCTCTTTAAATAACGATCATGAGGAATGTATGGGAAGGAAGAGAATG
GAGAGGAGCCCGTTGAATGGGGGAGCTGCCGCTGAGCGGGGTGGTGTGCTCTCTCAGAAG
CCAAGACCCAGAACGGCCTTTCTTCCATGGAGCCAAGCCTGAATCGGAACCCAGGCTCAT
CAGACCTTGAGTTTCCCAAGCTTCCTGCCCTCCAGAACCCCCTGCGCCAAAGAGAAAGGG
AGCTAGAGGACCCAGAGGGGAGAGTGTAGAAAAACCCTCAAAGGTTTATCCATTGATGAG
GTTCTGTGCCCCTTCCCTTCCTCTGAAAGCACTGAAAAGTAAGTGTGGTTGACACGCTCC
CT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCAAGTTTTTGTTGGAAGAAAATGTTCCAGCTGCACCCATGCTCCACCCCTGCCAACA
TATTCTGGGACCTGCGAGCACACTCGCTTGTGGACACACACGGGCTCATGCGTGCACGCA
CACACACACACACACACACACACACACCCATCCCATTTCTTCAGCAGCCCTGGTGTCTCT
GCTCCATTTTATTAAAGCAGAAAGCAGTGACAATTATTTTCATAATGAACTGGCTCTTCA
AATTAATGCCAATTACACTATGCAATCATGATTAAGATTATGCATTAATCAACGGTGCCA
ACCTACTTATTAGCCTCTTTAAATAACGATCATGAGGAATGTATGGGAAGGAAGAGAATG
GAGAGGAGCCCGTTGAATGGGGGAGCTGCCGCTGAGCGGGGTGGTGTGCTCTCTCAGAAG
CCAAGACCCAGAACGGCCTTTCTTCCATGGAGCCAAGCCTGAATCGGAACCCAGGCTCAT
CAGACCTTGAGTTTCCCAAGCTTCCTGCCCTCCAGAACCCCCTGCGCCAAAGAGAAAGGG
AGCTAGAGGACCCAGAGGGGAGAGTGTAGAAAAACCCTCAAAGGTTTATCCATTGATGAG
GTTCTGTGCCCCTTCCCTTCCTCTGAAAGCACTGAAAAGTAAGTGTGGTTGACACGCTCC
CT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               177-435, - strand, RNAz p=0.979268
               

               
               509-618, - strand, RNAz p=0.986516

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-435, - strand, RNAz p=0.979268
               

               
               509-618, - strand, RNAz p=0.986516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-655, gnl|bosTau2|chr3 (74863212-74863774)
               

               
               115-655, gnl|Hg17|chr1 (37043522-37042981)
               

               
               115-655, gnl|Mm7|chr4 (125049093-125049615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-655, gnl|bosTau2|chr3 (74863212-74863774)
               

               
               115-655, gnl|Hg17|chr1 (37043522-37042981)
               

               
               115-655, gnl|Mm7|chr4 (125049093-125049615)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	177-435, - strand, RNAz p=0.979268
	509-618, - strand, RNAz p=0.986516

	115-655, gnl\|bosTau2\|chr3 (74863212-74863774)
	115-655, gnl\|Hg17\|chr1 (37043522-37042981)
	115-655, gnl\|Mm7\|chr4 (125049093-125049615)