Non-Coding RNA Search

rpigcf0_003933.y1

Sequence:


               
               GTAGTTGTTTTGTAATTGTTCTTTAACTATACATATATTTTAATGCATTCTCATGTATGT
CTGATATATTATCTAATGATTAAATCAGAAAGATCAGATGTGAGCTTCTGAAAAAAAGTA
TTCTTTGTGGCATGTATGTGGTTTGGTCAATGCTGTGATTTGGGGTCAAGGTCAAGAACA
AGGAAGCATGCTGGTTCTAGCACAGAGCTTCATTACAGCTTACAGCCATACCAGAGCTAA
CCACATCCTATTTCCTCAGGTATATAAATACCAAATCCCTGAAGGAACAAGTGCTAACAA
TGCAAAGAACAGAAAGGACAAAACCCAAAAACTAAAACTGCATTAAAGACCAAAAACACA
GATAAAAACCACGGGTTGGTGAGGATGTGGAGAAACCAGAAAAGTGCATACACTGGTAAC
Aggaacgtagaatggtgcagcaactttggaaaacagtctggcaattcctcaaagatttat
aagacaccatacaaactagcaattctactcctaggtatgtacccaaaaggaataaaaac

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTTGTTTTGTAATTGTTCTTTAACTATACATATATTTTAATGCATTCTCATGTATGT
CTGATATATTATCTAATGATTAAATCAGAAAGATCAGATGTGAGCTTCTGAAAAAAAGTA
TTCTTTGTGGCATGTATGTGGTTTGGTCAATGCTGTGATTTGGGGTCAAGGTCAAGAACA
AGGAAGCATGCTGGTTCTAGCACAGAGCTTCATTACAGCTTACAGCCATACCAGAGCTAA
CCACATCCTATTTCCTCAGGTATATAAATACCAAATCCCTGAAGGAACAAGTGCTAACAA
TGCAAAGAACAGAAAGGACAAAACCCAAAAACTAAAACTGCATTAAAGACCAAAAACACA
GATAAAAACCACGGGTTGGTGAGGATGTGGAGAAACCAGAAAAGTGCATACACTGGTAAC
Aggaacgtagaatggtgcagcaactttggaaaacagtctggcaattcctcaaagatttat
aagacaccatacaaactagcaattctactcctaggtatgtacccaaaaggaataaaaac

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-307, - strand, RNAz p=0.516062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, - strand, RNAz p=0.516062

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-539, gnl|bosTau2|chr1 (64326658-64327185)
               

               
               6-539, gnl|Hg17|chr3 (173363750-173362969)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-539, gnl|bosTau2|chr1 (64326658-64327185)
               

               
               6-539, gnl|Hg17|chr3 (173363750-173362969)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	6-539, gnl\|bosTau2\|chr1 (64326658-64327185)
	6-539, gnl\|Hg17\|chr3 (173363750-173362969)