Non-Coding RNA Search

rpigcf0_003980.y1

Sequence:


               
               GGACTCAGAGTTTAGAATTTAAATTCAGTCCTGTGTAATTCCCAAGCCTGTTCTTTTCCC
ACTGCACACACTCCTGTGCACTGTGACGTGTGCACGAAGATGAAGAGTCCTAGGGGCTGG
TGCTGCTGATTAGTAAACCGGTTCATGCCCACAGTGGCCTTGCTGAACTGTTCAGTGCTT
CCCAGGCTCAGTACCAGCCCTACAAACCCTCCCCTCTACCTCCACCTGCATTCCAGACTC
AGCATCTATGCTTCTGACGCTGGCCTGCAATGGATCCTCCACCCTACTAATGAAAAGGGT
TATGCGTAGTTGACATAGAGACAATCAGATCAAGCCTGCCTGTGGAAATGAAAGAAGTTA
GACATTAAGCCTAGTGTTACTTCCGAGAGACATGTTATGACTTTCATGGGCCTTAAGCAA
TTTGGTCTTTGAGTGCCTCTTCTTCCATTAAAAAAAAAAAAAGTTAAAAAGCATTTGACA
ACTTCGGCGATGTAAAGACAAGTATAATCTGTGCCGGATCTATCATTCTTTATTCCCTAT
ATTCATTTTTTCATCATATTTTAAAAGGAATTAAAATGAAGACACTTCTGTGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTCAGAGTTTAGAATTTAAATTCAGTCCTGTGTAATTCCCAAGCCTGTTCTTTTCCC
ACTGCACACACTCCTGTGCACTGTGACGTGTGCACGAAGATGAAGAGTCCTAGGGGCTGG
TGCTGCTGATTAGTAAACCGGTTCATGCCCACAGTGGCCTTGCTGAACTGTTCAGTGCTT
CCCAGGCTCAGTACCAGCCCTACAAACCCTCCCCTCTACCTCCACCTGCATTCCAGACTC
AGCATCTATGCTTCTGACGCTGGCCTGCAATGGATCCTCCACCCTACTAATGAAAAGGGT
TATGCGTAGTTGACATAGAGACAATCAGATCAAGCCTGCCTGTGGAAATGAAAGAAGTTA
GACATTAAGCCTAGTGTTACTTCCGAGAGACATGTTATGACTTTCATGGGCCTTAAGCAA
TTTGGTCTTTGAGTGCCTCTTCTTCCATTAAAAAAAAAAAAAGTTAAAAAGCATTTGACA
ACTTCGGCGATGTAAAGACAAGTATAATCTGTGCCGGATCTATCATTCTTTATTCCCTAT
ATTCATTTTTTCATCATATTTTAAAAGGAATTAAAATGAAGACACTTCTGTGCACC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-339, gnl|bosTau2|chr26 (9809407-9809759)
               

               
               1-339, gnl|canFam2|chr8 (35096605-35097147)
               

               
               1-339, gnl|dasNov1|scaffold_287462 (680-1278)
               

               
               1-339, gnl|echTel1|scaffold_110540 (700-96)
               

               
               1-339, gnl|hg17|chr14 (55868216-55868815)
               

               
               1-339, gnl|Hg17|chr14 (55868690-55868333)
               

               
               1-339, gnl|loxAfr1|scaffold_68654 (28672-29245)
               

               
               1-339, gnl|mm7|chr14 (43615493-43616047)
               

               
               1-339, gnl|Mm7|chr14 (43615953-43615615)
               

               
               1-339, gnl|oryCun1|scaffold_204709 (192465-191858)
               

               
               1-339, gnl|panTro1|chr15 (55321525-55322124)
               

               
               1-339, gnl|rheMac2|chr7 (119371025-119371624)
               


               
               455-587, gnl|bosTau2|chr26 (9811306-9811443)
               

               
               455-587, gnl|Hg17|chr14 (55866874-55866748)
               

               
               455-587, gnl|Mm7|chr14 (43614218-43614091)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-339, gnl|bosTau2|chr26 (9809407-9809759)
               

               
               1-339, gnl|canFam2|chr8 (35096605-35097147)
               

               
               1-339, gnl|dasNov1|scaffold_287462 (680-1278)
               

               
               1-339, gnl|echTel1|scaffold_110540 (700-96)
               

               
               1-339, gnl|hg17|chr14 (55868216-55868815)
               

               
               1-339, gnl|Hg17|chr14 (55868690-55868333)
               

               
               1-339, gnl|loxAfr1|scaffold_68654 (28672-29245)
               

               
               1-339, gnl|mm7|chr14 (43615493-43616047)
               

               
               1-339, gnl|Mm7|chr14 (43615953-43615615)
               

               
               1-339, gnl|oryCun1|scaffold_204709 (192465-191858)
               

               
               1-339, gnl|panTro1|chr15 (55321525-55322124)
               

               
               1-339, gnl|rheMac2|chr7 (119371025-119371624)
               


               
               455-587, gnl|bosTau2|chr26 (9811306-9811443)
               

               
               455-587, gnl|Hg17|chr14 (55866874-55866748)
               

               
               455-587, gnl|Mm7|chr14 (43614218-43614091)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-339, gnl\|bosTau2\|chr26 (9809407-9809759)
	1-339, gnl\|canFam2\|chr8 (35096605-35097147)
	1-339, gnl\|dasNov1\|scaffold_287462 (680-1278)
	1-339, gnl\|echTel1\|scaffold_110540 (700-96)
	1-339, gnl\|hg17\|chr14 (55868216-55868815)
	1-339, gnl\|Hg17\|chr14 (55868690-55868333)
	1-339, gnl\|loxAfr1\|scaffold_68654 (28672-29245)
	1-339, gnl\|mm7\|chr14 (43615493-43616047)
	1-339, gnl\|Mm7\|chr14 (43615953-43615615)
	1-339, gnl\|oryCun1\|scaffold_204709 (192465-191858)
	1-339, gnl\|panTro1\|chr15 (55321525-55322124)
	1-339, gnl\|rheMac2\|chr7 (119371025-119371624)

	455-587, gnl\|bosTau2\|chr26 (9811306-9811443)
	455-587, gnl\|Hg17\|chr14 (55866874-55866748)
	455-587, gnl\|Mm7\|chr14 (43614218-43614091)