Non-Coding RNA Search

rpigcf0_003995.y1

Sequence:


               
               GATTCAAAACACTCCAAAACATTGTTCAGGCCCAACAACATATGTCTGTGGGTTGAATTT
GGTTGGCAGTCTGCCGGTGTTCCACCTCTTCTTGAATTTATAGCTGCTCCTAAGAAAGCA
GGAGCAGGATGTAATGATTAGAGAGAAATGAAGTCCTCCAAATAACTTCTGCAAACGCAA
AAAATCCTAATAAATGTTTAGAGACTGACTAGCACATTCAATTACTCTTTGAAAAATCTC
CATTATGTATAACTTTTTAATTTAGGTTTTTGTTTTGTTTGTCTGACTTTCACAACTAGG
TTCATTTTCCGTATTTGGAAGAACAAACTATTCTGCTGCCAAACCCTCTCAATGTATTTT
TTTAACCATTAAACTATGTTTTCAAAAGGTTGACGTCTAAATAATTGCAAATATAGTAAC
CCTTAGGTTCCCTGATGATATGGAATATGGACCAGAACATCTATACTTGTATCGATGCCT
AATTGTATGGGAGATAAAAGAGAGTTTTTTATATCTTGAGTGGTGATAATAATGGTAACA
ACAATTTAAACATATGTGCATACATGCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCAAAACACTCCAAAACATTGTTCAGGCCCAACAACATATGTCTGTGGGTTGAATTT
GGTTGGCAGTCTGCCGGTGTTCCACCTCTTCTTGAATTTATAGCTGCTCCTAAGAAAGCA
GGAGCAGGATGTAATGATTAGAGAGAAATGAAGTCCTCCAAATAACTTCTGCAAACGCAA
AAAATCCTAATAAATGTTTAGAGACTGACTAGCACATTCAATTACTCTTTGAAAAATCTC
CATTATGTATAACTTTTTAATTTAGGTTTTTGTTTTGTTTGTCTGACTTTCACAACTAGG
TTCATTTTCCGTATTTGGAAGAACAAACTATTCTGCTGCCAAACCCTCTCAATGTATTTT
TTTAACCATTAAACTATGTTTTCAAAAGGTTGACGTCTAAATAATTGCAAATATAGTAAC
CCTTAGGTTCCCTGATGATATGGAATATGGACCAGAACATCTATACTTGTATCGATGCCT
AATTGTATGGGAGATAAAAGAGAGTTTTTTATATCTTGAGTGGTGATAATAATGGTAACA
ACAATTTAAACATATGTGCATACATGCATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.71949

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.71949

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr2 (10323572-10324157)
               

               
               1-564, gnl|Hg17|chr2 (143733431-143734024)
               

               
               1-564, gnl|Mm7|chr2 (43771897-43772474)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr2 (10323572-10324157)
               

               
               1-564, gnl|Hg17|chr2 (143733431-143734024)
               

               
               1-564, gnl|Mm7|chr2 (43771897-43772474)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-564, gnl\|bosTau2\|chr2 (10323572-10324157)
	1-564, gnl\|Hg17\|chr2 (143733431-143734024)
	1-564, gnl\|Mm7\|chr2 (43771897-43772474)