Non-Coding RNA Search

rpigcf0_004007.y1

Sequence:


               
               CCTCCATATGCCGAGGGAGCGGCCCAAGAAATAGCAACAACAACAAAAAGACAAAAGACA
AAAAAAAAAAAAAAGAAGATATTGGGGAGGTAATCAGAGAATTTTGCAGCATACCTATGA
TGGTATAAGCAATGATATATTAAATAATATAATAATTGAATTGAAAATTTTCAGGCATAT
TTCTTATGGTTGTCCTGTTATATCCAAAGACATATAAATGCTTTAAATAAATGTAGAATT
CATTTTCTATTTTACTACAGAAGAGAAAAATAAGTTGTTTTCACCTTTAAATTACAGTAA
TTGTCTGTATCCTTTTTCTTTCTAGGGTGACTCTGGTGGACCTCTAGTTGGTGCAGATTA
TAAAGGCACCTGGTTCCTTGCTGGTATTGTAAGCTGGGGAGATGAATGTGCTCTTCCAAA
CAAGCCTGGTGTTTACACTCGAGGGGGGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCATATGCCGAGGGAGCGGCCCAAGAAATAGCAACAACAACAAAAAGACAAAAGACA
AAAAAAAAAAAAAAGAAGATATTGGGGAGGTAATCAGAGAATTTTGCAGCATACCTATGA
TGGTATAAGCAATGATATATTAAATAATATAATAATTGAATTGAAAATTTTCAGGCATAT
TTCTTATGGTTGTCCTGTTATATCCAAAGACATATAAATGCTTTAAATAAATGTAGAATT
CATTTTCTATTTTACTACAGAAGAGAAAAATAAGTTGTTTTCACCTTTAAATTACAGTAA
TTGTCTGTATCCTTTTTCTTTCTAGGGTGACTCTGGTGGACCTCTAGTTGGTGCAGATTA
TAAAGGCACCTGGTTCCTTGCTGGTATTGTAAGCTGGGGAGATGAATGTGCTCTTCCAAA
CAAGCCTGGTGTTTACACTCGAGGGGGGGCCC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               245-443, gnl|bosTau2|chr6 (43588332-43588530)
               

               
               245-443, gnl|canFam2|chr13 (61217139-61217334)
               

               
               245-443, gnl|danRer3|chr13 (26100006-26099842)
               

               
               245-443, gnl|dasNov1|scaffold_12943 (10344-10532)
               

               
               245-443, gnl|echTel1|scaffold_241937 (5237-5440)
               

               
               245-443, gnl|hg17|chr4 (68460947-68461158)
               

               
               245-443, gnl|loxAfr1|scaffold_47715 (10198-10399)
               

               
               245-443, gnl|mm7|chr5 (86168859-86169048)
               

               
               245-443, gnl|Mm7|chr5 (86169119-86168920)
               

               
               245-443, gnl|monDom2|scaffold_26 (33774831-33775030)
               

               
               245-443, gnl|oryCun1|scaffold_174922 (44346-44150)
               

               
               245-443, gnl|panTro1|chr3 (78027785-78027572)
               

               
               245-443, gnl|rheMac2|chr5 (61607541-61607330)
               

               
               245-443, gnl|rn3|chr14 (23606076-23605890)
               

               
               245-443, gnl|tetNig1|chr16 (5137343-5137511)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               245-443, gnl|bosTau2|chr6 (43588332-43588530)
               

               
               245-443, gnl|canFam2|chr13 (61217139-61217334)
               

               
               245-443, gnl|danRer3|chr13 (26100006-26099842)
               

               
               245-443, gnl|dasNov1|scaffold_12943 (10344-10532)
               

               
               245-443, gnl|echTel1|scaffold_241937 (5237-5440)
               

               
               245-443, gnl|hg17|chr4 (68460947-68461158)
               

               
               245-443, gnl|loxAfr1|scaffold_47715 (10198-10399)
               

               
               245-443, gnl|mm7|chr5 (86168859-86169048)
               

               
               245-443, gnl|Mm7|chr5 (86169119-86168920)
               

               
               245-443, gnl|monDom2|scaffold_26 (33774831-33775030)
               

               
               245-443, gnl|oryCun1|scaffold_174922 (44346-44150)
               

               
               245-443, gnl|panTro1|chr3 (78027785-78027572)
               

               
               245-443, gnl|rheMac2|chr5 (61607541-61607330)
               

               
               245-443, gnl|rn3|chr14 (23606076-23605890)
               

               
               245-443, gnl|tetNig1|chr16 (5137343-5137511)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	245-443, gnl\|bosTau2\|chr6 (43588332-43588530)
	245-443, gnl\|canFam2\|chr13 (61217139-61217334)
	245-443, gnl\|danRer3\|chr13 (26100006-26099842)
	245-443, gnl\|dasNov1\|scaffold_12943 (10344-10532)
	245-443, gnl\|echTel1\|scaffold_241937 (5237-5440)
	245-443, gnl\|hg17\|chr4 (68460947-68461158)
	245-443, gnl\|loxAfr1\|scaffold_47715 (10198-10399)
	245-443, gnl\|mm7\|chr5 (86168859-86169048)
	245-443, gnl\|Mm7\|chr5 (86169119-86168920)
	245-443, gnl\|monDom2\|scaffold_26 (33774831-33775030)
	245-443, gnl\|oryCun1\|scaffold_174922 (44346-44150)
	245-443, gnl\|panTro1\|chr3 (78027785-78027572)
	245-443, gnl\|rheMac2\|chr5 (61607541-61607330)
	245-443, gnl\|rn3\|chr14 (23606076-23605890)
	245-443, gnl\|tetNig1\|chr16 (5137343-5137511)