Non-Coding RNA Search

rpigcf0_004110.y1

Sequence:


               
               TTTTAAGAAGGACTCACTAACGCCTCATTGTTCCTAGAATCTGTACAAAATTGAGAATGC
CTTTCTGTTGCCATAAACATAAAACAAATGGGCTGGGCACAATATTTTTGGCTCAATCTT
TTTTTGTCCCCTCTTGTTTTCAGTATTCTGGAAACATTTCTCCACCTTCCTCTGTCATTA
AATGTTGCTATGGAGAAGGAGGAGGGCCAATTAAGTCCACATTTTTTTCTCCGAGCCCTA
GCTGATGACTTCATTTTTCTGTCTAAAAGTTACCTGCTTAGTGAGTTTTTAAAAATCCTA
TTCCAAGAATACGTAGTAGTTTTTCTGGGAAGTATTGTACAGGTTTAATCAGCAAATTAA
AATTTTCATTAATTTCAGAAAAGCTTTCTACTTTTATAATTTTGAAATATTCTGTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAGAAGGACTCACTAACGCCTCATTGTTCCTAGAATCTGTACAAAATTGAGAATGC
CTTTCTGTTGCCATAAACATAAAACAAATGGGCTGGGCACAATATTTTTGGCTCAATCTT
TTTTTGTCCCCTCTTGTTTTCAGTATTCTGGAAACATTTCTCCACCTTCCTCTGTCATTA
AATGTTGCTATGGAGAAGGAGGAGGGCCAATTAAGTCCACATTTTTTTCTCCGAGCCCTA
GCTGATGACTTCATTTTTCTGTCTAAAAGTTACCTGCTTAGTGAGTTTTTAAAAATCCTA
TTCCAAGAATACGTAGTAGTTTTTCTGGGAAGTATTGTACAGGTTTAATCAGCAAATTAA
AATTTTCATTAATTTCAGAAAAGCTTTCTACTTTTATAATTTTGAAATATTCTGTTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-212, + strand, RNAz p=0.999138

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-212, + strand, RNAz p=0.999138

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-419, gnl|bosTau2|chr6 (15333903-15333464)
               

               
               5-419, gnl|hg17|chr4 (89275809-89276675)
               

               
               5-419, gnl|Hg17|chr4 (89276778-89276316)
               

               
               5-419, gnl|panTro1|chr3 (105268011-105268877)
               

               
               5-419, gnl|rheMac2|chr5 (80963503-80964366)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-419, gnl|bosTau2|chr6 (15333903-15333464)
               

               
               5-419, gnl|hg17|chr4 (89275809-89276675)
               

               
               5-419, gnl|Hg17|chr4 (89276778-89276316)
               

               
               5-419, gnl|panTro1|chr3 (105268011-105268877)
               

               
               5-419, gnl|rheMac2|chr5 (80963503-80964366)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	5-419, gnl\|bosTau2\|chr6 (15333903-15333464)
	5-419, gnl\|hg17\|chr4 (89275809-89276675)
	5-419, gnl\|Hg17\|chr4 (89276778-89276316)
	5-419, gnl\|panTro1\|chr3 (105268011-105268877)
	5-419, gnl\|rheMac2\|chr5 (80963503-80964366)