Non-Coding RNA Search

rpigcf0_004177.y1

Sequence:


               
               GGGGCAGTGCCATAAAAGCACTCTCTCCACAAATCACTTTCTGTAATTTATTTGAGCAAA
TATAAAGAGGTTCTTAAATGCTTGGAAAAAGTAAAGTATGATTATATTAAGGACCCTGGG
GAGTTTGGTAGAAGTGTAGGCTGTGGAATAAGGCTGACTAAAGAAATATTCCTGGCTTTA
CTAGTTACCACCTGTGCAGCCTTAGAAAATATTTAATCTATACCAAGCTGGTTCCTCATC
TATAACGCAGGAAAAATAACATATATCATGTAAAGTTGTAAGGATTGGACACTATGTGTG
TA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCAGTGCCATAAAAGCACTCTCTCCACAAATCACTTTCTGTAATTTATTTGAGCAAA
TATAAAGAGGTTCTTAAATGCTTGGAAAAAGTAAAGTATGATTATATTAAGGACCCTGGG
GAGTTTGGTAGAAGTGTAGGCTGTGGAATAAGGCTGACTAAAGAAATATTCCTGGCTTTA
CTAGTTACCACCTGTGCAGCCTTAGAAAATATTTAATCTATACCAAGCTGGTTCCTCATC
TATAACGCAGGAAAAATAACATATATCATGTAAAGTTGTAAGGATTGGACACTATGTGTG
TA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-302, gnl|bosTau2|chr21 (27404533-27404837)
               

               
               1-302, gnl|canFam2|chr8 (11890386-11890738)
               

               
               1-302, gnl|echTel1|scaffold_281872 (7975-7669)
               

               
               1-302, gnl|hg17|chr14 (28980824-28981114)
               

               
               1-302, gnl|Hg17|chr14 (28981176-28980881)
               

               
               1-302, gnl|mm7|chr12 (48184119-48184451)
               

               
               1-302, gnl|Mm7|chr12 (48184528-48184214)
               

               
               1-302, gnl|oryCun1|scaffold_210115 (153397-153133)
               

               
               1-302, gnl|panTro1|chr15 (28175177-28175467)
               

               
               1-302, gnl|rheMac2|chr7 (92326292-92326582)
               

               
               1-302, gnl|rn3|chr6 (70106413-70106699)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-302, gnl|bosTau2|chr21 (27404533-27404837)
               

               
               1-302, gnl|canFam2|chr8 (11890386-11890738)
               

               
               1-302, gnl|echTel1|scaffold_281872 (7975-7669)
               

               
               1-302, gnl|hg17|chr14 (28980824-28981114)
               

               
               1-302, gnl|Hg17|chr14 (28981176-28980881)
               

               
               1-302, gnl|mm7|chr12 (48184119-48184451)
               

               
               1-302, gnl|Mm7|chr12 (48184528-48184214)
               

               
               1-302, gnl|oryCun1|scaffold_210115 (153397-153133)
               

               
               1-302, gnl|panTro1|chr15 (28175177-28175467)
               

               
               1-302, gnl|rheMac2|chr7 (92326292-92326582)
               

               
               1-302, gnl|rn3|chr6 (70106413-70106699)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-302, gnl\|bosTau2\|chr21 (27404533-27404837)
	1-302, gnl\|canFam2\|chr8 (11890386-11890738)
	1-302, gnl\|echTel1\|scaffold_281872 (7975-7669)
	1-302, gnl\|hg17\|chr14 (28980824-28981114)
	1-302, gnl\|Hg17\|chr14 (28981176-28980881)
	1-302, gnl\|mm7\|chr12 (48184119-48184451)
	1-302, gnl\|Mm7\|chr12 (48184528-48184214)
	1-302, gnl\|oryCun1\|scaffold_210115 (153397-153133)
	1-302, gnl\|panTro1\|chr15 (28175177-28175467)
	1-302, gnl\|rheMac2\|chr7 (92326292-92326582)
	1-302, gnl\|rn3\|chr6 (70106413-70106699)