rpigcf0_004212.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGGCTGGGATTGATGCAATAATATAGTCTATATTGATGCAATAATATAATCATCAGTA TAGAAATTGATTATGTTAATGGTCATAATAATTCTTTAATGAATAGCTGGACAGCACTGG CAATGGGTTGGAGCAGGCCATCAGGTCCAACAATGTTAAGTCCTTTAGGCATTTGTAGAT AGCTCAGTACTTTTCATTGGATTACTATAAGAAAGCTGTGGCAAATAGAATGGGAATAAT TAACAAAAGAAGGTTAATTATAACTAAATTATTAAGAAATTAAACCTCTGGGTTTTTTTG TAATTTTTACTTTCTATTGGAATATAGTTGATTTACAATGTTGTGTTAGTTTCAGGTGTA CAGAAAAGTGGTTCAGTTATACATTTACAAATACCCATTCTTTTTTTTTTTTTTTTTTTA AGGGCTGCACCTGTGGCGCATAGAGATTCCCAGGCTAGGGGCCTACTGTAGCCACTGgcc acagccacagcagcaccagatccgagctgtgtctgtgacctacaccatagcccacagcaa tgccagagccttaac |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGGCTGGGATTGATGCAATAATATAGTCTATATTGATGCAATAATATAATCATCAGTA TAGAAATTGATTATGTTAATGGTCATAATAATTCTTTAATGAATAGCTGGACAGCACTGG CAATGGGTTGGAGCAGGCCATCAGGTCCAACAATGTTAAGTCCTTTAGGCATTTGTAGAT AGCTCAGTACTTTTCATTGGATTACTATAAGAAAGCTGTGGCAAATAGAATGGGAATAAT TAACAAAAGAAGGTTAATTATAACTAAATTATTAAGAAATTAAACCTCTGGGTTTTTTTG TAATTTTTACTTTCTATTGGAATATAGTTGATTTACAATGTTGTGTTAGTTTCAGGTGTA CAGAAAAGTGGTTCAGTTATACATTTACAAATACCCATTCTTTTTTTTTTTTTTTTTTTA AGGGCTGCACCTGTGGCGCATAGAGATTCCCAGGCTAGGGGCCTACTGTAGCCACTGgcc acagccacagcagcaccagatccgagctgtgtctgtgacctacaccatagcccacagcaa tgccagagccttaac |
| Aligned organism(s): 131 entry(ies) | More info |
| Aligned organism(s): 131 entry(ies) | Help | Less info |
| 54-276, gnl|bosTau2|chrM (3315-3092) | |
| 54-276, gnl|canFam2|chrM (3426-2826) | |
| 54-276, gnl|canFam2|chrM (3339-2734) | |
| 54-276, gnl|canFam2|chrM (3339-2828) | |
| 54-276, gnl|canFam2|chrM (3337-2811) | |
| 54-276, gnl|canFam2|chrM (2818-3337) | |
| 54-276, gnl|canFam2|chrM (3112-2828) | |
| 54-276, gnl|canFam2|chrX (93612506-93612197) | |
| 54-276, gnl|canFam2|chrX (93612763-93612197) | |
| 54-276, gnl|canFam2|chrX (93612197-93612506) | |
| 54-276, gnl|danRer3|chr1 (48946696-48946174) | |
| 54-276, gnl|danRer3|chr1 (48946697-48946182) | |
| 54-276, gnl|danRer3|chr1 (48946177-48946696) | |
| 54-276, gnl|danRer3|chrM (4500-3900) | |
| 54-276, gnl|danRer3|chrM (4210-3894) | |
| 54-276, gnl|danRer3|chrM (4413-3902) | |
| 54-276, gnl|danRer3|chrM (3894-4210) | |
| 54-276, gnl|danRer3|chrM (4186-3902) | |
| 54-276, gnl|danRer3|chrNA (207776879-207777478) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9736-10336) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9823-10429) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9823-10334) | |
| 54-276, gnl|dasNov1|scaffold_23239 (10050-10334) | |
| 54-276, gnl|dasNov1|scaffold_274549 (777-1303) | |
| 54-276, gnl|dasNov1|scaffold_274549 (776-1292) | |
| 54-276, gnl|dasNov1|scaffold_53598 (5021-4707) | |
| 54-276, gnl|dasNov1|scaffold_53598 (4703-5222) | |
| 54-276, gnl|dasNov1|scaffold_53598 (4707-5021) | |
| 54-276, gnl|echTel1|scaffold_142456 (575-259) | |
| 54-276, gnl|echTel1|scaffold_142456 (777-259) | |
| 54-276, gnl|echTel1|scaffold_142456 (257-776) | |
| 54-276, gnl|echTel1|scaffold_142456 (259-575) | |
| 54-276, gnl|echTel1|scaffold_181343 (2821-2221) | |
| 54-276, gnl|echTel1|scaffold_181343 (2734-2129) | |
| 54-276, gnl|echTel1|scaffold_181343 (2734-2223) | |
| 54-276, gnl|echTel1|scaffold_181343 (2507-2223) | |
| 54-276, gnl|echTel1|scaffold_230847 (2384-2910) | |
| 54-276, gnl|galGal2|chrM (4750-4150) | |
| 54-276, gnl|galGal2|chrM (4663-4049) | |
| 54-276, gnl|galGal2|chrM (4460-4146) | |
| 54-276, gnl|galGal2|chrM (4663-4152) | |
| 54-276, gnl|galGal2|chrM (4661-4135) | |
| 54-276, gnl|galGal2|chrM (4662-4146) | |
| 54-276, gnl|galGal2|chrM (4142-4661) | |
| 54-276, gnl|galGal2|chrM (4146-4460) | |
| 54-276, gnl|galGal2|chrM (4436-4152) | |
| 54-276, gnl|hg17|chr10 (71025611-71026226) | |
| 54-276, gnl|hg17|chr11 (89308506-89308821) | |
| 54-276, gnl|hg17|chr11 (102783730-102784235) | |
| 54-276, gnl|hg17|chr11 (49790643-49791163) | |
| 54-276, gnl|hg17|chr11 (54797524-54798046) | |
| 54-276, gnl|hg17|chr11 (48951079-48951597) | |
| 54-276, gnl|hg17|chr11 (89281357-89281672) | |
| 54-276, gnl|hg17|chr16 (3360229-3360829) | |
| 54-276, gnl|hg17|chr4 (156742222-156742501) | |
| 54-276, gnl|Hg17|chrM (3522-3299) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28551-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28752-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28753-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28238-28752) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28238-28551) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6427-5827) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6340-5737) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6340-5829) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6113-5829) | |
| 54-276, gnl|mm7|chrM (3430-2830) | |
| 54-276, gnl|mm7|chrM (3343-2740) | |
| 54-276, gnl|mm7|chrM (3140-2826) | |
| 54-276, gnl|mm7|chrM (3343-2832) | |
| 54-276, gnl|mm7|chrM (3341-2826) | |
| 54-276, gnl|mm7|chrM (3341-2826) | |
| 54-276, gnl|mm7|chrM (2826-3341) | |
| 54-276, gnl|mm7|chrM (2826-3140) | |
| 54-276, gnl|mm7|chrM (3116-2832) | |
| 54-276, gnl|Mm7|chrM (2965-2744) | |
| 54-276, gnl|monDom2|scaffold_1076 (8679-9285) | |
| 54-276, gnl|monDom2|scaffold_16 (11093508-11094030) | |
| 54-276, gnl|monDom2|scaffold_2006 (2579-2265) | |
| 54-276, gnl|monDom2|scaffold_2006 (3038-3561) | |
| 54-276, gnl|monDom2|scaffold_2006 (3553-3239) | |
| 54-276, gnl|monDom2|scaffold_298 (148881-149392) | |
| 54-276, gnl|monDom2|scaffold_485 (32625-32025) | |
| 54-276, gnl|monDom2|scaffold_485 (12261-11977) | |
| 54-276, gnl|monDom2|scaffold_6 (103173394-103173913) | |
| 54-276, gnl|oryCun1|scaffold_116167 (5510-5227) | |
| 54-276, gnl|oryCun1|scaffold_158229 (4191-3586) | |
| 54-276, gnl|oryCun1|scaffold_158229 (4191-3680) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1878-1278) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1588-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1789-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1790-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1275-1789) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1275-1588) | |
| 54-276, gnl|panTro1|chr18 (3224159-3224759) | |
| 54-276, gnl|panTro1|chr3 (174196833-174197111) | |
| 54-276, gnl|panTro1|chr8 (72183176-72183791) | |
| 54-276, gnl|panTro1|chr9 (91126252-91126567) | |
| 54-276, gnl|panTro1|chr9 (104768841-104769346) | |
| 54-276, gnl|panTro1|chr9 (49473252-49472727) | |
| 54-276, gnl|panTro1|chr9 (49473258-49472736) | |
| 54-276, gnl|panTro1|chr9 (49472734-49473252) | |
| 54-276, gnl|panTro1|chr9 (91101750-91102067) | |
| 54-276, gnl|rheMac2|chr14 (88455819-88456124) | |
| 54-276, gnl|rheMac2|chr14 (102012078-102012581) | |
| 54-276, gnl|rheMac2|chr14 (88455619-88456133) | |
| 54-276, gnl|rheMac2|chr14 (88455612-88456124) | |
| 54-276, gnl|rheMac2|chr14 (88456126-88455618) | |
| 54-276, gnl|rheMac2|chr14 (88456124-88455820) | |
| 54-276, gnl|rheMac2|chr20 (3504230-3504828) | |
| 54-276, gnl|rheMac2|chr5 (147647841-147648125) | |
| 54-276, gnl|rheMac2|chr9 (67427580-67426963) | |
| 54-276, gnl|rn3|chr3 (129985386-129984809) | |
| 54-276, gnl|rn3|chr3 (129985299-129984707) | |
| 54-276, gnl|rn3|chr3 (129985097-129984805) | |
| 54-276, gnl|rn3|chr3 (129985299-129984811) | |
| 54-276, gnl|rn3|chr3 (129985297-129984805) | |
| 54-276, gnl|rn3|chr3 (129985297-129984805) | |
| 54-276, gnl|rn3|chr3 (129984805-129985097) | |
| 54-276, gnl|rn3|chr3 (129985073-129984811) | |
| 54-276, gnl|tetNig1|chrUn_random (103513289-103512689) | |
| 54-276, gnl|tetNig1|chrUn_random (103513202-103512623) | |
| 54-276, gnl|tetNig1|chrUn_random (103512999-103512683) | |
| 54-276, gnl|tetNig1|chrUn_random (103513202-103512691) | |
| 54-276, gnl|tetNig1|chrUn_random (103513200-103512674) | |
| 54-276, gnl|tetNig1|chrUn_random (103513201-103512683) | |
| 54-276, gnl|tetNig1|chrUn_random (103512681-103513200) | |
| 54-276, gnl|tetNig1|chrUn_random (103512683-103512999) | |
| 54-276, gnl|tetNig1|chrUn_random (103512975-103512691) | |
| 54-276, gnl|xenTro1|scaffold_3610 (11906-11276) | |
| 54-276, gnl|xenTro1|scaffold_3610 (11553-11276) | |
| 293-417, gnl|bosTau2|chr17 (4271100-4271224) |
| Aligned organism(s): 131 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-276, gnl|bosTau2|chrM (3315-3092) | |
| 54-276, gnl|canFam2|chrM (3426-2826) | |
| 54-276, gnl|canFam2|chrM (3339-2734) | |
| 54-276, gnl|canFam2|chrM (3339-2828) | |
| 54-276, gnl|canFam2|chrM (3337-2811) | |
| 54-276, gnl|canFam2|chrM (2818-3337) | |
| 54-276, gnl|canFam2|chrM (3112-2828) | |
| 54-276, gnl|canFam2|chrX (93612506-93612197) | |
| 54-276, gnl|canFam2|chrX (93612763-93612197) | |
| 54-276, gnl|canFam2|chrX (93612197-93612506) | |
| 54-276, gnl|danRer3|chr1 (48946696-48946174) | |
| 54-276, gnl|danRer3|chr1 (48946697-48946182) | |
| 54-276, gnl|danRer3|chr1 (48946177-48946696) | |
| 54-276, gnl|danRer3|chrM (4500-3900) | |
| 54-276, gnl|danRer3|chrM (4210-3894) | |
| 54-276, gnl|danRer3|chrM (4413-3902) | |
| 54-276, gnl|danRer3|chrM (3894-4210) | |
| 54-276, gnl|danRer3|chrM (4186-3902) | |
| 54-276, gnl|danRer3|chrNA (207776879-207777478) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9736-10336) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9823-10429) | |
| 54-276, gnl|dasNov1|scaffold_23239 (9823-10334) | |
| 54-276, gnl|dasNov1|scaffold_23239 (10050-10334) | |
| 54-276, gnl|dasNov1|scaffold_274549 (777-1303) | |
| 54-276, gnl|dasNov1|scaffold_274549 (776-1292) | |
| 54-276, gnl|dasNov1|scaffold_53598 (5021-4707) | |
| 54-276, gnl|dasNov1|scaffold_53598 (4703-5222) | |
| 54-276, gnl|dasNov1|scaffold_53598 (4707-5021) | |
| 54-276, gnl|echTel1|scaffold_142456 (575-259) | |
| 54-276, gnl|echTel1|scaffold_142456 (777-259) | |
| 54-276, gnl|echTel1|scaffold_142456 (257-776) | |
| 54-276, gnl|echTel1|scaffold_142456 (259-575) | |
| 54-276, gnl|echTel1|scaffold_181343 (2821-2221) | |
| 54-276, gnl|echTel1|scaffold_181343 (2734-2129) | |
| 54-276, gnl|echTel1|scaffold_181343 (2734-2223) | |
| 54-276, gnl|echTel1|scaffold_181343 (2507-2223) | |
| 54-276, gnl|echTel1|scaffold_230847 (2384-2910) | |
| 54-276, gnl|galGal2|chrM (4750-4150) | |
| 54-276, gnl|galGal2|chrM (4663-4049) | |
| 54-276, gnl|galGal2|chrM (4460-4146) | |
| 54-276, gnl|galGal2|chrM (4663-4152) | |
| 54-276, gnl|galGal2|chrM (4661-4135) | |
| 54-276, gnl|galGal2|chrM (4662-4146) | |
| 54-276, gnl|galGal2|chrM (4142-4661) | |
| 54-276, gnl|galGal2|chrM (4146-4460) | |
| 54-276, gnl|galGal2|chrM (4436-4152) | |
| 54-276, gnl|hg17|chr10 (71025611-71026226) | |
| 54-276, gnl|hg17|chr11 (89308506-89308821) | |
| 54-276, gnl|hg17|chr11 (102783730-102784235) | |
| 54-276, gnl|hg17|chr11 (49790643-49791163) | |
| 54-276, gnl|hg17|chr11 (54797524-54798046) | |
| 54-276, gnl|hg17|chr11 (48951079-48951597) | |
| 54-276, gnl|hg17|chr11 (89281357-89281672) | |
| 54-276, gnl|hg17|chr16 (3360229-3360829) | |
| 54-276, gnl|hg17|chr4 (156742222-156742501) | |
| 54-276, gnl|Hg17|chrM (3522-3299) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28551-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28752-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28753-28238) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28238-28752) | |
| 54-276, gnl|loxAfr1|scaffold_17571 (28238-28551) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6427-5827) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6340-5737) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6340-5829) | |
| 54-276, gnl|loxAfr1|scaffold_36650 (6113-5829) | |
| 54-276, gnl|mm7|chrM (3430-2830) | |
| 54-276, gnl|mm7|chrM (3343-2740) | |
| 54-276, gnl|mm7|chrM (3140-2826) | |
| 54-276, gnl|mm7|chrM (3343-2832) | |
| 54-276, gnl|mm7|chrM (3341-2826) | |
| 54-276, gnl|mm7|chrM (3341-2826) | |
| 54-276, gnl|mm7|chrM (2826-3341) | |
| 54-276, gnl|mm7|chrM (2826-3140) | |
| 54-276, gnl|mm7|chrM (3116-2832) | |
| 54-276, gnl|Mm7|chrM (2965-2744) | |
| 54-276, gnl|monDom2|scaffold_1076 (8679-9285) | |
| 54-276, gnl|monDom2|scaffold_16 (11093508-11094030) | |
| 54-276, gnl|monDom2|scaffold_2006 (2579-2265) | |
| 54-276, gnl|monDom2|scaffold_2006 (3038-3561) | |
| 54-276, gnl|monDom2|scaffold_2006 (3553-3239) | |
| 54-276, gnl|monDom2|scaffold_298 (148881-149392) | |
| 54-276, gnl|monDom2|scaffold_485 (32625-32025) | |
| 54-276, gnl|monDom2|scaffold_485 (12261-11977) | |
| 54-276, gnl|monDom2|scaffold_6 (103173394-103173913) | |
| 54-276, gnl|oryCun1|scaffold_116167 (5510-5227) | |
| 54-276, gnl|oryCun1|scaffold_158229 (4191-3586) | |
| 54-276, gnl|oryCun1|scaffold_158229 (4191-3680) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1878-1278) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1588-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1789-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1790-1275) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1275-1789) | |
| 54-276, gnl|oryCun1|scaffold_80605 (1275-1588) | |
| 54-276, gnl|panTro1|chr18 (3224159-3224759) | |
| 54-276, gnl|panTro1|chr3 (174196833-174197111) | |
| 54-276, gnl|panTro1|chr8 (72183176-72183791) | |
| 54-276, gnl|panTro1|chr9 (91126252-91126567) | |
| 54-276, gnl|panTro1|chr9 (104768841-104769346) | |
| 54-276, gnl|panTro1|chr9 (49473252-49472727) | |
| 54-276, gnl|panTro1|chr9 (49473258-49472736) | |
| 54-276, gnl|panTro1|chr9 (49472734-49473252) | |
| 54-276, gnl|panTro1|chr9 (91101750-91102067) | |
| 54-276, gnl|rheMac2|chr14 (88455819-88456124) | |
| 54-276, gnl|rheMac2|chr14 (102012078-102012581) | |
| 54-276, gnl|rheMac2|chr14 (88455619-88456133) | |
| 54-276, gnl|rheMac2|chr14 (88455612-88456124) | |
| 54-276, gnl|rheMac2|chr14 (88456126-88455618) | |
| 54-276, gnl|rheMac2|chr14 (88456124-88455820) | |
| 54-276, gnl|rheMac2|chr20 (3504230-3504828) | |
| 54-276, gnl|rheMac2|chr5 (147647841-147648125) | |
| 54-276, gnl|rheMac2|chr9 (67427580-67426963) | |
| 54-276, gnl|rn3|chr3 (129985386-129984809) | |
| 54-276, gnl|rn3|chr3 (129985299-129984707) | |
| 54-276, gnl|rn3|chr3 (129985097-129984805) | |
| 54-276, gnl|rn3|chr3 (129985299-129984811) | |
| 54-276, gnl|rn3|chr3 (129985297-129984805) | |
| 54-276, gnl|rn3|chr3 (129985297-129984805) | |
| 54-276, gnl|rn3|chr3 (129984805-129985097) | |
| 54-276, gnl|rn3|chr3 (129985073-129984811) | |
| 54-276, gnl|tetNig1|chrUn_random (103513289-103512689) | |
| 54-276, gnl|tetNig1|chrUn_random (103513202-103512623) | |
| 54-276, gnl|tetNig1|chrUn_random (103512999-103512683) | |
| 54-276, gnl|tetNig1|chrUn_random (103513202-103512691) | |
| 54-276, gnl|tetNig1|chrUn_random (103513200-103512674) | |
| 54-276, gnl|tetNig1|chrUn_random (103513201-103512683) | |
| 54-276, gnl|tetNig1|chrUn_random (103512681-103513200) | |
| 54-276, gnl|tetNig1|chrUn_random (103512683-103512999) | |
| 54-276, gnl|tetNig1|chrUn_random (103512975-103512691) | |
| 54-276, gnl|xenTro1|scaffold_3610 (11906-11276) | |
| 54-276, gnl|xenTro1|scaffold_3610 (11553-11276) | |
| 293-417, gnl|bosTau2|chr17 (4271100-4271224) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ctl (0.153069) |