Non-Coding RNA Search

rpigcf0_004289.y1

Sequence:


               
               TTcaacgcaggatccgagccgcgtcttcgacctacaccaagctcatggcaactccagatc
cttcacccactgagcaaggccagggactgaacccacaaccgcatggttcctagtcggatt
cgttaaccactgcgccacgacgggaactccaccttcctgcttgcttgccgtgctgtggca
tgtggaagttcctagggccagagattgaacctgtgccacagcagtgataacactggatcc
ttaactgctaggctaccagggaactccGTAGGTCTTTCTGACCCCAGAACTTGTTTCTAA
ATACTGTACCGACCTGCTCTGAGTGGAGCAGAATCTGGACAAGGAGACAGGAGAGCACAG
GGATGGGGCTTTTCGGTTCCTGGGGAGCGGGCGGACCTGTGGCCGTCGCTGGTGGCTGAG
TCTGCGACTGGACTTAACTGCCTCTTGAAACCCTTGCCAGGAACTGGATCCGCCAATACC
CAGCCTTGGTGAACTGCACAACCATCAACTGGTTCTCAGAGTGGCCTCGCGAGGCCCTGC
TGGAGGTGGCTGAGAAGTACCTGCTGGGAGCCGACCTGGGGACCCAGGAGAACGTGAGGC
CCTCCTCCCCGCCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTcaacgcaggatccgagccgcgtcttcgacctacaccaagctcatggcaactccagatc
cttcacccactgagcaaggccagggactgaacccacaaccgcatggttcctagtcggatt
cgttaaccactgcgccacgacgggaactccaccttcctgcttgcttgccgtgctgtggca
tgtggaagttcctagggccagagattgaacctgtgccacagcagtgataacactggatcc
ttaactgctaggctaccagggaactccGTAGGTCTTTCTGACCCCAGAACTTGTTTCTAA
ATACTGTACCGACCTGCTCTGAGTGGAGCAGAATCTGGACAAGGAGACAGGAGAGCACAG
GGATGGGGCTTTTCGGTTCCTGGGGAGCGGGCGGACCTGTGGCCGTCGCTGGTGGCTGAG
TCTGCGACTGGACTTAACTGCCTCTTGAAACCCTTGCCAGGAACTGGATCCGCCAATACC
CAGCCTTGGTGAACTGCACAACCATCAACTGGTTCTCAGAGTGGCCTCGCGAGGCCCTGC
TGGAGGTGGCTGAGAAGTACCTGCTGGGAGCCGACCTGGGGACCCAGGAGAACGTGAGGC
CCTCCTCCCCGCCTCTCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               273-618, gnl|bosTau2|chr19 (15431256-15430904)
               

               
               273-618, gnl|Hg17|chr17 (7645423-7645796)
               

               
               273-618, gnl|Mm7|chr11 (69533106-69532782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-618, gnl|bosTau2|chr19 (15431256-15430904)
               

               
               273-618, gnl|Hg17|chr17 (7645423-7645796)
               

               
               273-618, gnl|Mm7|chr11 (69533106-69532782)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	273-618, gnl\|bosTau2\|chr19 (15431256-15430904)
	273-618, gnl\|Hg17\|chr17 (7645423-7645796)
	273-618, gnl\|Mm7\|chr11 (69533106-69532782)