Non-Coding RNA Search

rpigcf0_004305.y1

Sequence:


               
               TTCCAAATTATATGTAATCAACGAGGAAATCAATAAGCACTGCAAGCGCATTAAAGAGTT
TAGCAGATTCATTATGTATTTAGCACATTCAGTCCAATTTGCAGGAAGTTCAGAGAAAAA
CAGGTTTAGCATGTAAACAGTGACTCTGATTGAGTTTTTGGAGAGTCCTGGCTGCACAGC
CCTTAGAGGTGAGAGCAGATCAGGAACCTCAGCATCCCCCCACCCGACTATTTAGTCCAG
CCTGCCCCAGGCCAGTCCCATGAGTCAGGGGTTTCATCTCCAAAGGCGGTGATGAGTACC
TCACAGGTCATCTCTTCTTGGAAATTCTCTGGGGGGAAAAGGAAGGGGAGGGAGGAAGGA
TGTATGAAACTTCTTGGGACTTTTGCCTTTCCCTCAATTTCTCAGCAGCCTTATGCCTCT
GAAAAGAGGTCATTTACTAATTCATCCAACAAACCTTGTCTGAACACTTGCTGTGTGCCA
GGTCACAGGCCAAGCTCTAGGCTCAAGCTGAACCAGACCTGGATCTGCCTTCAAGCAACT
CA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAAATTATATGTAATCAACGAGGAAATCAATAAGCACTGCAAGCGCATTAAAGAGTT
TAGCAGATTCATTATGTATTTAGCACATTCAGTCCAATTTGCAGGAAGTTCAGAGAAAAA
CAGGTTTAGCATGTAAACAGTGACTCTGATTGAGTTTTTGGAGAGTCCTGGCTGCACAGC
CCTTAGAGGTGAGAGCAGATCAGGAACCTCAGCATCCCCCCACCCGACTATTTAGTCCAG
CCTGCCCCAGGCCAGTCCCATGAGTCAGGGGTTTCATCTCCAAAGGCGGTGATGAGTACC
TCACAGGTCATCTCTTCTTGGAAATTCTCTGGGGGGAAAAGGAAGGGGAGGGAGGAAGGA
TGTATGAAACTTCTTGGGACTTTTGCCTTTCCCTCAATTTCTCAGCAGCCTTATGCCTCT
GAAAAGAGGTCATTTACTAATTCATCCAACAAACCTTGTCTGAACACTTGCTGTGTGCCA
GGTCACAGGCCAAGCTCTAGGCTCAAGCTGAACCAGACCTGGATCTGCCTTCAAGCAACT
CA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               331-446, + strand, RNAz p=0.909794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-446, + strand, RNAz p=0.909794

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-199, gnl|bosTau2|chr10 (701873-701677)
               

               
               4-199, gnl|Hg17|chr5 (174947790-174947990)
               

               
               4-199, gnl|Mm7|chr13 (53191970-53192170)
               


               
               331-542, gnl|bosTau2|chr10 (701537-701324)
               

               
               331-542, gnl|Hg17|chr5 (174948152-174948850)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-199, gnl|bosTau2|chr10 (701873-701677)
               

               
               4-199, gnl|Hg17|chr5 (174947790-174947990)
               

               
               4-199, gnl|Mm7|chr13 (53191970-53192170)
               


               
               331-542, gnl|bosTau2|chr10 (701537-701324)
               

               
               331-542, gnl|Hg17|chr5 (174948152-174948850)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	4-199, gnl\|bosTau2\|chr10 (701873-701677)
	4-199, gnl\|Hg17\|chr5 (174947790-174947990)
	4-199, gnl\|Mm7\|chr13 (53191970-53192170)

	331-542, gnl\|bosTau2\|chr10 (701537-701324)
	331-542, gnl\|Hg17\|chr5 (174948152-174948850)