Non-Coding RNA Search

rpigcf0_004370.y1

Sequence:


               
               GAATTCCCCCTGTTTATCATGTAAAATGTGGCAAAATGTCTCAAAGGACATAATATATGT
CTTTTGCTGTTCATATGTGTCCCTAACAACAGAAAAAATGTAATAGTTTTTAGCTGTATT
TGAAAAAACTGGCATATTTTATCTATCAGTAAGACATAAAAGCTGCCAGAACAAAATCAA
GGAAATTGAAGCATGGACATAATCATATTATTACACATTTATTAGGAAAAAGATTATAAA
GATAGCGATATTTTTCATCAGGAGGCATAAACTGGCTTGATTTTTATTTGTTCTTTGTCA
CTTGCATAATCTTTTTTGTTTCATTTAGGTGTTGACAGATTCATGCCTCTCACCAGGAGA
AACAGAAAGGAGTCAAATATCTTAGTTTTTTTTCCAAAGAGCATCACAGTAAAAAAATTT
CTAATGAGATATAAAGTATTATATCAGGCAAAATGTAATTCAAGACCTTTTAGAATCAAG
GTAAATTACCTCCTAGGAAGTTATATCCCTGTGAGGTGATGCACAAAAATAGGACTGTAA
TAATCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCCCCCTGTTTATCATGTAAAATGTGGCAAAATGTCTCAAAGGACATAATATATGT
CTTTTGCTGTTCATATGTGTCCCTAACAACAGAAAAAATGTAATAGTTTTTAGCTGTATT
TGAAAAAACTGGCATATTTTATCTATCAGTAAGACATAAAAGCTGCCAGAACAAAATCAA
GGAAATTGAAGCATGGACATAATCATATTATTACACATTTATTAGGAAAAAGATTATAAA
GATAGCGATATTTTTCATCAGGAGGCATAAACTGGCTTGATTTTTATTTGTTCTTTGTCA
CTTGCATAATCTTTTTTGTTTCATTTAGGTGTTGACAGATTCATGCCTCTCACCAGGAGA
AACAGAAAGGAGTCAAATATCTTAGTTTTTTTTCCAAAGAGCATCACAGTAAAAAAATTT
CTAATGAGATATAAAGTATTATATCAGGCAAAATGTAATTCAAGACCTTTTAGAATCAAG
GTAAATTACCTCCTAGGAAGTTATATCCCTGTGAGGTGATGCACAAAAATAGGACTGTAA
TAATCTCTG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-549, gnl|bosTau2|chr2 (18432688-18433214)
               

               
               3-549, gnl|canFam2|chr36 (10893707-10894279)
               

               
               3-549, gnl|echTel1|scaffold_315710 (110356-109789)
               

               
               3-549, gnl|hg17|chr2 (163146155-163146731)
               

               
               3-549, gnl|Hg17|chr2 (163146765-163146217)
               

               
               3-549, gnl|loxAfr1|scaffold_58264 (32738-32177)
               

               
               3-549, gnl|mm7|chr2 (62729725-62730277)
               

               
               3-549, gnl|Mm7|chr2 (62730312-62729788)
               

               
               3-549, gnl|monDom2|scaffold_2 (57250603-57251180)
               

               
               3-549, gnl|oryCun1|scaffold_196666 (29376-29954)
               

               
               3-549, gnl|panTro1|chr13 (52546614-52547190)
               

               
               3-549, gnl|rheMac2|chr12 (26044965-26045541)
               

               
               3-549, gnl|rn3|chr3 (44654795-44655355)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-549, gnl|bosTau2|chr2 (18432688-18433214)
               

               
               3-549, gnl|canFam2|chr36 (10893707-10894279)
               

               
               3-549, gnl|echTel1|scaffold_315710 (110356-109789)
               

               
               3-549, gnl|hg17|chr2 (163146155-163146731)
               

               
               3-549, gnl|Hg17|chr2 (163146765-163146217)
               

               
               3-549, gnl|loxAfr1|scaffold_58264 (32738-32177)
               

               
               3-549, gnl|mm7|chr2 (62729725-62730277)
               

               
               3-549, gnl|Mm7|chr2 (62730312-62729788)
               

               
               3-549, gnl|monDom2|scaffold_2 (57250603-57251180)
               

               
               3-549, gnl|oryCun1|scaffold_196666 (29376-29954)
               

               
               3-549, gnl|panTro1|chr13 (52546614-52547190)
               

               
               3-549, gnl|rheMac2|chr12 (26044965-26045541)
               

               
               3-549, gnl|rn3|chr3 (44654795-44655355)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	3-549, gnl\|bosTau2\|chr2 (18432688-18433214)
	3-549, gnl\|canFam2\|chr36 (10893707-10894279)
	3-549, gnl\|echTel1\|scaffold_315710 (110356-109789)
	3-549, gnl\|hg17\|chr2 (163146155-163146731)
	3-549, gnl\|Hg17\|chr2 (163146765-163146217)
	3-549, gnl\|loxAfr1\|scaffold_58264 (32738-32177)
	3-549, gnl\|mm7\|chr2 (62729725-62730277)
	3-549, gnl\|Mm7\|chr2 (62730312-62729788)
	3-549, gnl\|monDom2\|scaffold_2 (57250603-57251180)
	3-549, gnl\|oryCun1\|scaffold_196666 (29376-29954)
	3-549, gnl\|panTro1\|chr13 (52546614-52547190)
	3-549, gnl\|rheMac2\|chr12 (26044965-26045541)
	3-549, gnl\|rn3\|chr3 (44654795-44655355)