Non-Coding RNA Search

rpigcf0_004604.y1

Sequence:


               
               TCCAGTACGAACAATTGTTTGGCTTGAAGGCTCCATGTGGCCAATTACTCCAGCAAAGGC
TCAGCTGGAATGGGGCACGGAGCCTGCCAGGACTGAGGGACAGAGACTGACACAGGCTCA
AGCGTCTTGATCATGGCTCTGGGATCCCAGAGCATCCCAGTAAGGATACTCACAGAATAC
ACTCCACCCCAGGCAGCACACGGCGTCATTCTGCACCCAACCCGGTCAGGAATGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGTACGAACAATTGTTTGGCTTGAAGGCTCCATGTGGCCAATTACTCCAGCAAAGGC
TCAGCTGGAATGGGGCACGGAGCCTGCCAGGACTGAGGGACAGAGACTGACACAGGCTCA
AGCGTCTTGATCATGGCTCTGGGATCCCAGAGCATCCCAGTAAGGATACTCACAGAATAC
ACTCCACCCCAGGCAGCACACGGCGTCATTCTGCACCCAACCCGGTCAGGAATGTGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-236, + strand, RNAz p=0.995755
               

               
               61-197, - strand, RNAz p=0.992893

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-236, + strand, RNAz p=0.995755
               

               
               61-197, - strand, RNAz p=0.992893

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               4-236, gnl|bosTau2|chr3 (67963019-67962793)
               

               
               4-236, gnl|canFam2|chr15 (5603680-5603373)
               

               
               4-236, gnl|dasNov1|scaffold_282464 (1157-1463)
               

               
               4-236, gnl|echTel1|scaffold_276355 (10518-10111)
               

               
               4-236, gnl|hg17|chr1 (40526984-40527292)
               

               
               4-236, gnl|Hg17|chr1 (40527230-40526998)
               

               
               4-236, gnl|loxAfr1|scaffold_6650 (7348-7084)
               

               
               4-236, gnl|mm7|chr4 (120439496-120439190)
               

               
               4-236, gnl|Mm7|chr4 (120439250-120439486)
               

               
               4-236, gnl|monDom2|scaffold_43 (8658016-8657650)
               

               
               4-236, gnl|oryCun1|scaffold_202969 (47158-46850)
               

               
               4-236, gnl|panTro1|chr1 (41418980-41419288)
               

               
               4-236, gnl|rheMac2|chr1 (43271986-43272280)
               

               
               4-236, gnl|rn3|chr5 (141579062-141578784)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-236, gnl|bosTau2|chr3 (67963019-67962793)
               

               
               4-236, gnl|canFam2|chr15 (5603680-5603373)
               

               
               4-236, gnl|dasNov1|scaffold_282464 (1157-1463)
               

               
               4-236, gnl|echTel1|scaffold_276355 (10518-10111)
               

               
               4-236, gnl|hg17|chr1 (40526984-40527292)
               

               
               4-236, gnl|Hg17|chr1 (40527230-40526998)
               

               
               4-236, gnl|loxAfr1|scaffold_6650 (7348-7084)
               

               
               4-236, gnl|mm7|chr4 (120439496-120439190)
               

               
               4-236, gnl|Mm7|chr4 (120439250-120439486)
               

               
               4-236, gnl|monDom2|scaffold_43 (8658016-8657650)
               

               
               4-236, gnl|oryCun1|scaffold_202969 (47158-46850)
               

               
               4-236, gnl|panTro1|chr1 (41418980-41419288)
               

               
               4-236, gnl|rheMac2|chr1 (43271986-43272280)
               

               
               4-236, gnl|rn3|chr5 (141579062-141578784)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	4-236, + strand, RNAz p=0.995755
	61-197, - strand, RNAz p=0.992893

	4-236, gnl\|bosTau2\|chr3 (67963019-67962793)
	4-236, gnl\|canFam2\|chr15 (5603680-5603373)
	4-236, gnl\|dasNov1\|scaffold_282464 (1157-1463)
	4-236, gnl\|echTel1\|scaffold_276355 (10518-10111)
	4-236, gnl\|hg17\|chr1 (40526984-40527292)
	4-236, gnl\|Hg17\|chr1 (40527230-40526998)
	4-236, gnl\|loxAfr1\|scaffold_6650 (7348-7084)
	4-236, gnl\|mm7\|chr4 (120439496-120439190)
	4-236, gnl\|Mm7\|chr4 (120439250-120439486)
	4-236, gnl\|monDom2\|scaffold_43 (8658016-8657650)
	4-236, gnl\|oryCun1\|scaffold_202969 (47158-46850)
	4-236, gnl\|panTro1\|chr1 (41418980-41419288)
	4-236, gnl\|rheMac2\|chr1 (43271986-43272280)
	4-236, gnl\|rn3\|chr5 (141579062-141578784)