Non-Coding RNA Search

rpigcf0_004724.y1

Sequence:


               
               AGAGAGAGAGAGAGAGACTATCTGAGTTTTTTCTTCTCTTCCTATATCAAAATGACCAAA
CTCAACCTAGAATTCCATTTTCCAGAGTTTATATTTTGGCCATTGCATGTAACAATATGA
GAATTTTAGTGGGTGGGTGAAACACTGAGTTTGATAACTGTGTATGCATTGAAGGACAAA
ATGGATTAAGCCTCTCTCATGTGAGATAACAGAGCTCTGCTCTTTTAGTCAACCTAAAAT
TCTGCCAGTGCCTGCTTGTTTTCTAATGAGATTTCAGGTCATGGCTGACCTTGCTTTAGT
AGCATCTCTTTCCCTGAGTGACGAAACTACCCAGAAATCCAGCATACAAATACCAGACTC
TCTGCTTGATTCTGAATTCCTGTTCTGGTCACATACGATTTATTTATAAACACATATGGC
CAATAAAAGTTTAGATAGAGCTCATCATTATACAGACTCATCTTATTCACAAATCCCTGG
GGCTTAGTCGTTACGTCAGCCATTGTATAAGGCCTAAGTTCAGGTTTAGATACAATACAG
CAAAGATTTTCCTGTAGGAATAGTGATCCTATTAAACATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGAGAGAGAGAGACTATCTGAGTTTTTTCTTCTCTTCCTATATCAAAATGACCAAA
CTCAACCTAGAATTCCATTTTCCAGAGTTTATATTTTGGCCATTGCATGTAACAATATGA
GAATTTTAGTGGGTGGGTGAAACACTGAGTTTGATAACTGTGTATGCATTGAAGGACAAA
ATGGATTAAGCCTCTCTCATGTGAGATAACAGAGCTCTGCTCTTTTAGTCAACCTAAAAT
TCTGCCAGTGCCTGCTTGTTTTCTAATGAGATTTCAGGTCATGGCTGACCTTGCTTTAGT
AGCATCTCTTTCCCTGAGTGACGAAACTACCCAGAAATCCAGCATACAAATACCAGACTC
TCTGCTTGATTCTGAATTCCTGTTCTGGTCACATACGATTTATTTATAAACACATATGGC
CAATAAAAGTTTAGATAGAGCTCATCATTATACAGACTCATCTTATTCACAAATCCCTGG
GGCTTAGTCGTTACGTCAGCCATTGTATAAGGCCTAAGTTCAGGTTTAGATACAATACAG
CAAAGATTTTCCTGTAGGAATAGTGATCCTATTAAACATATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               248-353, - strand, RNAz p=0.996091
               

               
               390-482, - strand, RNAz p=0.711901

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-353, - strand, RNAz p=0.996091
               

               
               390-482, - strand, RNAz p=0.711901

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               23-353, gnl|bosTau2|chr20 (11311064-11311400)
               

               
               23-353, gnl|Hg17|chr5 (58913990-58913618)
               


               
               390-582, gnl|bosTau2|chr20 (11311394-11311588)
               

               
               390-582, gnl|canFam2|chr2 (49255918-49256140)
               

               
               390-582, gnl|dasNov1|scaffold_3207 (51398-51637)
               

               
               390-582, gnl|echTel1|scaffold_307972 (60568-60328)
               

               
               390-582, gnl|hg17|chr5 (58913405-58913644)
               

               
               390-582, gnl|Hg17|chr5 (58913624-58913431)
               

               
               390-582, gnl|mm7|chr13 (106587186-106586965)
               

               
               390-582, gnl|Mm7|chr13 (106586954-106587157)
               

               
               390-582, gnl|monDom2|scaffold_27 (23139678-23139930)
               

               
               390-582, gnl|oryCun1|scaffold_204209 (183812-183574)
               

               
               390-582, gnl|panTro1|chr4_random (37502717-37502478)
               

               
               390-582, gnl|rheMac2|chr6 (57250178-57250417)
               

               
               390-582, gnl|rn3|chr2 (40745057-40744844)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-353, gnl|bosTau2|chr20 (11311064-11311400)
               

               
               23-353, gnl|Hg17|chr5 (58913990-58913618)
               


               
               390-582, gnl|bosTau2|chr20 (11311394-11311588)
               

               
               390-582, gnl|canFam2|chr2 (49255918-49256140)
               

               
               390-582, gnl|dasNov1|scaffold_3207 (51398-51637)
               

               
               390-582, gnl|echTel1|scaffold_307972 (60568-60328)
               

               
               390-582, gnl|hg17|chr5 (58913405-58913644)
               

               
               390-582, gnl|Hg17|chr5 (58913624-58913431)
               

               
               390-582, gnl|mm7|chr13 (106587186-106586965)
               

               
               390-582, gnl|Mm7|chr13 (106586954-106587157)
               

               
               390-582, gnl|monDom2|scaffold_27 (23139678-23139930)
               

               
               390-582, gnl|oryCun1|scaffold_204209 (183812-183574)
               

               
               390-582, gnl|panTro1|chr4_random (37502717-37502478)
               

               
               390-582, gnl|rheMac2|chr6 (57250178-57250417)
               

               
               390-582, gnl|rn3|chr2 (40745057-40744844)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	248-353, - strand, RNAz p=0.996091
	390-482, - strand, RNAz p=0.711901

	23-353, gnl\|bosTau2\|chr20 (11311064-11311400)
	23-353, gnl\|Hg17\|chr5 (58913990-58913618)

	390-582, gnl\|bosTau2\|chr20 (11311394-11311588)
	390-582, gnl\|canFam2\|chr2 (49255918-49256140)
	390-582, gnl\|dasNov1\|scaffold_3207 (51398-51637)
	390-582, gnl\|echTel1\|scaffold_307972 (60568-60328)
	390-582, gnl\|hg17\|chr5 (58913405-58913644)
	390-582, gnl\|Hg17\|chr5 (58913624-58913431)
	390-582, gnl\|mm7\|chr13 (106587186-106586965)
	390-582, gnl\|Mm7\|chr13 (106586954-106587157)
	390-582, gnl\|monDom2\|scaffold_27 (23139678-23139930)
	390-582, gnl\|oryCun1\|scaffold_204209 (183812-183574)
	390-582, gnl\|panTro1\|chr4_random (37502717-37502478)
	390-582, gnl\|rheMac2\|chr6 (57250178-57250417)
	390-582, gnl\|rn3\|chr2 (40745057-40744844)