Non-Coding RNA Search

rpigcf0_004725.y1

Sequence:


               
               TAGATGGAGCTTCTTTTAGATAATTGCTTGGGATGAGTGAATACCCCAATATTTATTTTG
CAGGGATGTCAGTGAATTATGAATGGATGTAAAGTGTTGCACTGGGCAAGCACTGTAATT
AATAAAGCCAGTTTCCCATGGTTTTGTAAGAGCCAGAGCGATGCTGGGGCCCTGTGGTCC
TGTAACTGATACACATAACAGATTTTAGAGGCCGTCGTGAACAAAGCACAGGCAAGGGGG
AGAGAGCTGGCTGGACTCTGGAACAACCCCTTTTTATCTGAGTGTCTCTTCTCCCCTCCC
CTTGATAAAGAGACCACAGCAACACCTTTACATAAAACAGCCTTTCCACCCCAGGCTCTG
AGAGCTTAATCTCTAGCGTTTGCTGACAATGGCTTAACAGATGACCCCTCCTGGGAATTT
CCTTGGGAGGTAAAGATTCCTAAACCACAAACATGTCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATGGAGCTTCTTTTAGATAATTGCTTGGGATGAGTGAATACCCCAATATTTATTTTG
CAGGGATGTCAGTGAATTATGAATGGATGTAAAGTGTTGCACTGGGCAAGCACTGTAATT
AATAAAGCCAGTTTCCCATGGTTTTGTAAGAGCCAGAGCGATGCTGGGGCCCTGTGGTCC
TGTAACTGATACACATAACAGATTTTAGAGGCCGTCGTGAACAAAGCACAGGCAAGGGGG
AGAGAGCTGGCTGGACTCTGGAACAACCCCTTTTTATCTGAGTGTCTCTTCTCCCCTCCC
CTTGATAAAGAGACCACAGCAACACCTTTACATAAAACAGCCTTTCCACCCCAGGCTCTG
AGAGCTTAATCTCTAGCGTTTGCTGACAATGGCTTAACAGATGACCCCTCCTGGGAATTT
CCTTGGGAGGTAAAGATTCCTAAACCACAAACATGTCCAGT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-446, gnl|bosTau2|chr12 (44027905-44027469)
               

               
               3-446, gnl|canFam2|chr22 (59018601-59019206)
               

               
               3-446, gnl|echTel1|scaffold_211427 (1236-643)
               

               
               3-446, gnl|hg17|chr13 (106536577-106537190)
               

               
               3-446, gnl|Hg17|chr13 (106537006-106536576)
               

               
               3-446, gnl|loxAfr1|scaffold_47264 (9367-8759)
               

               
               3-446, gnl|mm7|chr8 (9113853-9114489)
               

               
               3-446, gnl|Mm7|chr8 (9114281-9113831)
               

               
               3-446, gnl|monDom2|scaffold_11 (41789810-41789207)
               

               
               3-446, gnl|oryCun1|scaffold_174329 (10870-10214)
               

               
               3-446, gnl|panTro1|chr14 (89939489-89940102)
               

               
               3-446, gnl|rheMac2|chr17 (87270797-87271499)
               

               
               3-446, gnl|rn3|chr16 (85675095-85674375)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-446, gnl|bosTau2|chr12 (44027905-44027469)
               

               
               3-446, gnl|canFam2|chr22 (59018601-59019206)
               

               
               3-446, gnl|echTel1|scaffold_211427 (1236-643)
               

               
               3-446, gnl|hg17|chr13 (106536577-106537190)
               

               
               3-446, gnl|Hg17|chr13 (106537006-106536576)
               

               
               3-446, gnl|loxAfr1|scaffold_47264 (9367-8759)
               

               
               3-446, gnl|mm7|chr8 (9113853-9114489)
               

               
               3-446, gnl|Mm7|chr8 (9114281-9113831)
               

               
               3-446, gnl|monDom2|scaffold_11 (41789810-41789207)
               

               
               3-446, gnl|oryCun1|scaffold_174329 (10870-10214)
               

               
               3-446, gnl|panTro1|chr14 (89939489-89940102)
               

               
               3-446, gnl|rheMac2|chr17 (87270797-87271499)
               

               
               3-446, gnl|rn3|chr16 (85675095-85674375)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	3-446, gnl\|bosTau2\|chr12 (44027905-44027469)
	3-446, gnl\|canFam2\|chr22 (59018601-59019206)
	3-446, gnl\|echTel1\|scaffold_211427 (1236-643)
	3-446, gnl\|hg17\|chr13 (106536577-106537190)
	3-446, gnl\|Hg17\|chr13 (106537006-106536576)
	3-446, gnl\|loxAfr1\|scaffold_47264 (9367-8759)
	3-446, gnl\|mm7\|chr8 (9113853-9114489)
	3-446, gnl\|Mm7\|chr8 (9114281-9113831)
	3-446, gnl\|monDom2\|scaffold_11 (41789810-41789207)
	3-446, gnl\|oryCun1\|scaffold_174329 (10870-10214)
	3-446, gnl\|panTro1\|chr14 (89939489-89940102)
	3-446, gnl\|rheMac2\|chr17 (87270797-87271499)
	3-446, gnl\|rn3\|chr16 (85675095-85674375)