Non-Coding RNA Search

rpigcf0_004733.y1

Sequence:


               
               CAGGAATTCGAATTCCAAAAATCTAAACTTTCTAACTGGCAAATGACTTGACAGGAGCTG
CACTGAGGTTGCAGCTTTTTATTTTTGGCAAAAGACGGTCTAGCTAGGATCACCGATAGG
AAAAACAAGCTTATGGGGGGGTGGTTATTTCATTACGAGAATCATTTGAATCTCAGCCAG
CAGGAATTTACAAATAAATAACCAATCTATGAATCATCTTCCTCTGCTCATTAATGCACA
GACCCTACTTCATCTTATTGTTCCACTGGTGCTGTCTGCGCTTGAACATAATAATATACT
GCGTTTCTTTATAAAATATTGGCTAAGATTGCTATTCCAAAACAGGGATGAGCTGGCCCT
CCCCTGAGTCATCAGTCTTCTGTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTCGAATTCCAAAAATCTAAACTTTCTAACTGGCAAATGACTTGACAGGAGCTG
CACTGAGGTTGCAGCTTTTTATTTTTGGCAAAAGACGGTCTAGCTAGGATCACCGATAGG
AAAAACAAGCTTATGGGGGGGTGGTTATTTCATTACGAGAATCATTTGAATCTCAGCCAG
CAGGAATTTACAAATAAATAACCAATCTATGAATCATCTTCCTCTGCTCATTAATGCACA
GACCCTACTTCATCTTATTGTTCCACTGGTGCTGTCTGCGCTTGAACATAATAATATACT
GCGTTTCTTTATAAAATATTGGCTAAGATTGCTATTCCAAAACAGGGATGAGCTGGCCCT
CCCCTGAGTCATCAGTCTTCTGTTTGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               16-387, gnl|bosTau2|chrX (38600305-38600682)
               

               
               16-387, gnl|canFam2|chrX (17803215-17803561)
               

               
               16-387, gnl|dasNov1|scaffold_9157 (9343-9699)
               

               
               16-387, gnl|echTel1|scaffold_315606 (45473-45121)
               

               
               16-387, gnl|hg17|chrX (21831448-21831790)
               

               
               16-387, gnl|Hg17|chrX (21831828-21831464)
               

               
               16-387, gnl|loxAfr1|scaffold_149302 (3960-3613)
               

               
               16-387, gnl|mm7|chrX (152172036-152171735)
               

               
               16-387, gnl|Mm7|chrX (152171698-152172018)
               

               
               16-387, gnl|oryCun1|scaffold_208038 (59527-59180)
               

               
               16-387, gnl|panTro1|chrX (22634479-22634831)
               

               
               16-387, gnl|rheMac2|chrX (19821201-19821530)
               

               
               16-387, gnl|rn3|chrX (58990833-58991124)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-387, gnl|bosTau2|chrX (38600305-38600682)
               

               
               16-387, gnl|canFam2|chrX (17803215-17803561)
               

               
               16-387, gnl|dasNov1|scaffold_9157 (9343-9699)
               

               
               16-387, gnl|echTel1|scaffold_315606 (45473-45121)
               

               
               16-387, gnl|hg17|chrX (21831448-21831790)
               

               
               16-387, gnl|Hg17|chrX (21831828-21831464)
               

               
               16-387, gnl|loxAfr1|scaffold_149302 (3960-3613)
               

               
               16-387, gnl|mm7|chrX (152172036-152171735)
               

               
               16-387, gnl|Mm7|chrX (152171698-152172018)
               

               
               16-387, gnl|oryCun1|scaffold_208038 (59527-59180)
               

               
               16-387, gnl|panTro1|chrX (22634479-22634831)
               

               
               16-387, gnl|rheMac2|chrX (19821201-19821530)
               

               
               16-387, gnl|rn3|chrX (58990833-58991124)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	16-387, gnl\|bosTau2\|chrX (38600305-38600682)
	16-387, gnl\|canFam2\|chrX (17803215-17803561)
	16-387, gnl\|dasNov1\|scaffold_9157 (9343-9699)
	16-387, gnl\|echTel1\|scaffold_315606 (45473-45121)
	16-387, gnl\|hg17\|chrX (21831448-21831790)
	16-387, gnl\|Hg17\|chrX (21831828-21831464)
	16-387, gnl\|loxAfr1\|scaffold_149302 (3960-3613)
	16-387, gnl\|mm7\|chrX (152172036-152171735)
	16-387, gnl\|Mm7\|chrX (152171698-152172018)
	16-387, gnl\|oryCun1\|scaffold_208038 (59527-59180)
	16-387, gnl\|panTro1\|chrX (22634479-22634831)
	16-387, gnl\|rheMac2\|chrX (19821201-19821530)
	16-387, gnl\|rn3\|chrX (58990833-58991124)