Non-Coding RNA Search

rpigcf0_004747.y1

Sequence:


               
               TCCAACAAAATTCAGTTTATGTATTATACATTTCAATAATTAAGAACACTTGTCTGTCAA
AACTGCATTATTAACCTGTGACAGTATAATCATGTACCAGCCTAATCTGATAGATTCAGT
TAGCTGCCGTTTTAGGTGAATGAAATATTCTTTTTCTGTTACTGTAGACTGTTTTGGTCT
AGGTCACTTGGGAATGGCTGAGTCACAATGCCCAGCATGTAAAATACCCACTGAGAGTTA
TTTTCTCAAAGTACACTTACTTTCCAACCATTATGGTATAGTTTCACACACTATAGTCTA
TATTGATGCTAACGACTGGTGCCCTAGTGATCCAACAGAAATAATGACTGCTTACCAAAA
GCTTCCAGAAATACTCGTAAACCCTGTGGGATAGTGACAACAATGCTAGATTTAGGAGTA
AAGAAATTTGGATAATTAGTCTCAGCTCTAATAATTAGTTGTGCTCACTTAGCACCTTTA
TCATTTGTCTTCTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAACAAAATTCAGTTTATGTATTATACATTTCAATAATTAAGAACACTTGTCTGTCAA
AACTGCATTATTAACCTGTGACAGTATAATCATGTACCAGCCTAATCTGATAGATTCAGT
TAGCTGCCGTTTTAGGTGAATGAAATATTCTTTTTCTGTTACTGTAGACTGTTTTGGTCT
AGGTCACTTGGGAATGGCTGAGTCACAATGCCCAGCATGTAAAATACCCACTGAGAGTTA
TTTTCTCAAAGTACACTTACTTTCCAACCATTATGGTATAGTTTCACACACTATAGTCTA
TATTGATGCTAACGACTGGTGCCCTAGTGATCCAACAGAAATAATGACTGCTTACCAAAA
GCTTCCAGAAATACTCGTAAACCCTGTGGGATAGTGACAACAATGCTAGATTTAGGAGTA
AAGAAATTTGGATAATTAGTCTCAGCTCTAATAATTAGTTGTGCTCACTTAGCACCTTTA
TCATTTGTCTTCTCATC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               5-497, gnl|bosTau2|chr2 (23345627-23346115)
               

               
               5-497, gnl|canFam2|chr36 (11963896-11964468)
               

               
               5-497, gnl|dasNov1|scaffold_2221 (44763-44151)
               

               
               5-497, gnl|echTel1|scaffold_302509 (3378-3949)
               

               
               5-497, gnl|hg17|chr2 (164323905-164324472)
               

               
               5-497, gnl|Hg17|chr2 (164323959-164324444)
               

               
               5-497, gnl|loxAfr1|scaffold_23291 (6382-6935)
               

               
               5-497, gnl|mm7|chr2 (63939835-63940364)
               

               
               5-497, gnl|Mm7|chr2 (63939889-63940356)
               

               
               5-497, gnl|panTro1|chr13 (53722848-53723415)
               

               
               5-497, gnl|rheMac2|chr12 (27264608-27265164)
               

               
               5-497, gnl|rn3|chr3 (45934270-45934803)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-497, gnl|bosTau2|chr2 (23345627-23346115)
               

               
               5-497, gnl|canFam2|chr36 (11963896-11964468)
               

               
               5-497, gnl|dasNov1|scaffold_2221 (44763-44151)
               

               
               5-497, gnl|echTel1|scaffold_302509 (3378-3949)
               

               
               5-497, gnl|hg17|chr2 (164323905-164324472)
               

               
               5-497, gnl|Hg17|chr2 (164323959-164324444)
               

               
               5-497, gnl|loxAfr1|scaffold_23291 (6382-6935)
               

               
               5-497, gnl|mm7|chr2 (63939835-63940364)
               

               
               5-497, gnl|Mm7|chr2 (63939889-63940356)
               

               
               5-497, gnl|panTro1|chr13 (53722848-53723415)
               

               
               5-497, gnl|rheMac2|chr12 (27264608-27265164)
               

               
               5-497, gnl|rn3|chr3 (45934270-45934803)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	5-497, gnl\|bosTau2\|chr2 (23345627-23346115)
	5-497, gnl\|canFam2\|chr36 (11963896-11964468)
	5-497, gnl\|dasNov1\|scaffold_2221 (44763-44151)
	5-497, gnl\|echTel1\|scaffold_302509 (3378-3949)
	5-497, gnl\|hg17\|chr2 (164323905-164324472)
	5-497, gnl\|Hg17\|chr2 (164323959-164324444)
	5-497, gnl\|loxAfr1\|scaffold_23291 (6382-6935)
	5-497, gnl\|mm7\|chr2 (63939835-63940364)
	5-497, gnl\|Mm7\|chr2 (63939889-63940356)
	5-497, gnl\|panTro1\|chr13 (53722848-53723415)
	5-497, gnl\|rheMac2\|chr12 (27264608-27265164)
	5-497, gnl\|rn3\|chr3 (45934270-45934803)