Non-Coding RNA Search

rpigcf0_004996.y1

Sequence:


               
               CAGGAATTCGAATTCGTGGGCCTTGAAAAGATGTCATTCCATCTCAGCCCTCAGCTGCTG
CCCTGCCCGCCGCTGCCCTGCCCGCCCCTGCCCCACCCCGATTTCAGAGGCGAGGCCCTA
AAAAGGGCGCTAATTTGCTCAAAGTCACACACCAAACAGGTGGTAGCCTCAGTCTCGGCT
CCCAACCCATCCTTACCTCTTCCCTATCTCAAATTTTGGTCTGTTATTTTATTTCTACAG
ATTTAGCTCACTTTTAAATTTTATTTATTCATTTTTATTTTTTGGCTgtggcattcggaa
gttcccaggccagggacccagcctgtgccacagcagggacccaagccacagcagggacaa
caccagatccttaacccactaggctactagggaactccAAGCTCATCTTTTAATTAATTA
CTTTTTCAAGCTTACCTTTTTAGAAAAATTATTTCTTTTTTTTTTTTTAATTTACTCCTC
Ccctgggacatagggacgttcttaggctaggggttgaattggagctgcagctgccggcct
atgtcacagccacagcaatgtgggatccaagccgtatctg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTCGAATTCGTGGGCCTTGAAAAGATGTCATTCCATCTCAGCCCTCAGCTGCTG
CCCTGCCCGCCGCTGCCCTGCCCGCCCCTGCCCCACCCCGATTTCAGAGGCGAGGCCCTA
AAAAGGGCGCTAATTTGCTCAAAGTCACACACCAAACAGGTGGTAGCCTCAGTCTCGGCT
CCCAACCCATCCTTACCTCTTCCCTATCTCAAATTTTGGTCTGTTATTTTATTTCTACAG
ATTTAGCTCACTTTTAAATTTTATTTATTCATTTTTATTTTTTGGCTgtggcattcggaa
gttcccaggccagggacccagcctgtgccacagcagggacccaagccacagcagggacaa
caccagatccttaacccactaggctactagggaactccAAGCTCATCTTTTAATTAATTA
CTTTTTCAAGCTTACCTTTTTAGAAAAATTATTTCTTTTTTTTTTTTTAATTTACTCCTC
Ccctgggacatagggacgttcttaggctaggggttgaattggagctgcagctgccggcct
atgtcacagccacagcaatgtgggatccaagccgtatctg

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               53-212, - strand, RNAz p=0.981727
               

               
               97-213, - strand, RNAz p=0.956276

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-212, - strand, RNAz p=0.981727
               

               
               97-213, - strand, RNAz p=0.956276

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               53-277, gnl|bosTau2|chr16 (39027206-39026979)
               

               
               53-277, gnl|canFam2|chr2 (84709260-84709524)
               

               
               53-277, gnl|canFam2|chr2 (84709524-84709260)
               

               
               53-277, gnl|Hg17|chr1 (15874632-15874418)
               

               
               53-277, gnl|hg17|chr7 (51216053-51216329)
               

               
               53-277, gnl|hg17|chr7 (39616578-39616853)
               

               
               53-277, gnl|loxAfr1|scaffold_113 (136860-137121)
               

               
               53-277, gnl|loxAfr1|scaffold_113 (137121-136860)
               

               
               53-277, gnl|panTro1|chr6 (52857596-52857877)
               

               
               53-277, gnl|panTro1|chr6 (44864652-44864376)
               

               
               53-277, gnl|rheMac2|chr3 (70572584-70572313)
               

               
               53-277, gnl|rheMac2|chr3 (70572313-70572584)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-277, gnl|bosTau2|chr16 (39027206-39026979)
               

               
               53-277, gnl|canFam2|chr2 (84709260-84709524)
               

               
               53-277, gnl|canFam2|chr2 (84709524-84709260)
               

               
               53-277, gnl|Hg17|chr1 (15874632-15874418)
               

               
               53-277, gnl|hg17|chr7 (51216053-51216329)
               

               
               53-277, gnl|hg17|chr7 (39616578-39616853)
               

               
               53-277, gnl|loxAfr1|scaffold_113 (136860-137121)
               

               
               53-277, gnl|loxAfr1|scaffold_113 (137121-136860)
               

               
               53-277, gnl|panTro1|chr6 (52857596-52857877)
               

               
               53-277, gnl|panTro1|chr6 (44864652-44864376)
               

               
               53-277, gnl|rheMac2|chr3 (70572584-70572313)
               

               
               53-277, gnl|rheMac2|chr3 (70572313-70572584)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	53-212, - strand, RNAz p=0.981727
	97-213, - strand, RNAz p=0.956276

	53-277, gnl\|bosTau2\|chr16 (39027206-39026979)
	53-277, gnl\|canFam2\|chr2 (84709260-84709524)
	53-277, gnl\|canFam2\|chr2 (84709524-84709260)
	53-277, gnl\|Hg17\|chr1 (15874632-15874418)
	53-277, gnl\|hg17\|chr7 (51216053-51216329)
	53-277, gnl\|hg17\|chr7 (39616578-39616853)
	53-277, gnl\|loxAfr1\|scaffold_113 (136860-137121)
	53-277, gnl\|loxAfr1\|scaffold_113 (137121-136860)
	53-277, gnl\|panTro1\|chr6 (52857596-52857877)
	53-277, gnl\|panTro1\|chr6 (44864652-44864376)
	53-277, gnl\|rheMac2\|chr3 (70572584-70572313)
	53-277, gnl\|rheMac2\|chr3 (70572313-70572584)