Non-Coding RNA Search

rpigcf0_005328.y1

Sequence:


               
               GCAGGAAAGCAGTGGGGAGAAGGAGGCCCAAGAAACAGAGATTATTGTGCCAGAAAAAAA
AAAACATGAATAAGACATCTGGTGTCTGCAGGCTTCCTTGGGTTCAGGTGGACATGCAGA
AATAGGGATCCTTTCCATCTCTAAATCCCTGGGCTCATCTCCAGAATATCTGTCAAGTTC
AAATCTATCAAACTGGGTGCAGGATTTGGTTGGCTCGAGTGCATTTGGCAGACATCTGCC
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGAAAGCAGTGGGGAGAAGGAGGCCCAAGAAACAGAGATTATTGTGCCAGAAAAAAA
AAAACATGAATAAGACATCTGGTGTCTGCAGGCTTCCTTGGGTTCAGGTGGACATGCAGA
AATAGGGATCCTTTCCATCTCTAAATCCCTGGGCTCATCTCCAGAATATCTGTCAAGTTC
AAATCTATCAAACTGGGTGCAGGATTTGGTTGGCTCGAGTGCATTTGGCAGACATCTGCC
T

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-215, gnl|bosTau2|chr16 (42920316-42920530)
               

               
               1-215, gnl|canFam2|chr7 (27045253-27045025)
               

               
               1-215, gnl|dasNov1|scaffold_577 (84265-84512)
               

               
               1-215, gnl|hg17|chr1 (172073431-172073684)
               

               
               1-215, gnl|Hg17|chr1 (172073452-172073666)
               

               
               1-215, gnl|mm7|chr1 (159842151-159841911)
               

               
               1-215, gnl|Mm7|chr1 (159842131-159841915)
               

               
               1-215, gnl|oryCun1|scaffold_206247 (65193-65424)
               

               
               1-215, gnl|panTro1|chr1 (154472786-154473039)
               

               
               1-215, gnl|rheMac2|chr1 (204972994-204973248)
               

               
               1-215, gnl|rn3|chr13 (75315638-75315402)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-215, gnl|bosTau2|chr16 (42920316-42920530)
               

               
               1-215, gnl|canFam2|chr7 (27045253-27045025)
               

               
               1-215, gnl|dasNov1|scaffold_577 (84265-84512)
               

               
               1-215, gnl|hg17|chr1 (172073431-172073684)
               

               
               1-215, gnl|Hg17|chr1 (172073452-172073666)
               

               
               1-215, gnl|mm7|chr1 (159842151-159841911)
               

               
               1-215, gnl|Mm7|chr1 (159842131-159841915)
               

               
               1-215, gnl|oryCun1|scaffold_206247 (65193-65424)
               

               
               1-215, gnl|panTro1|chr1 (154472786-154473039)
               

               
               1-215, gnl|rheMac2|chr1 (204972994-204973248)
               

               
               1-215, gnl|rn3|chr13 (75315638-75315402)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-215, gnl\|bosTau2\|chr16 (42920316-42920530)
	1-215, gnl\|canFam2\|chr7 (27045253-27045025)
	1-215, gnl\|dasNov1\|scaffold_577 (84265-84512)
	1-215, gnl\|hg17\|chr1 (172073431-172073684)
	1-215, gnl\|Hg17\|chr1 (172073452-172073666)
	1-215, gnl\|mm7\|chr1 (159842151-159841911)
	1-215, gnl\|Mm7\|chr1 (159842131-159841915)
	1-215, gnl\|oryCun1\|scaffold_206247 (65193-65424)
	1-215, gnl\|panTro1\|chr1 (154472786-154473039)
	1-215, gnl\|rheMac2\|chr1 (204972994-204973248)
	1-215, gnl\|rn3\|chr13 (75315638-75315402)