Non-Coding RNA Search

rpigcf0_007234.y1

Sequence:


               
               GAATTTTTCTACCTGCTAGTCTACCCTTAAGTAAATATCCCGTTTGTTTCCATGAAGTGC
ATAATGAGCTGAATGAATGAAAACGTTAAGATGAATTTAAAAGCAAAATGCTCATGAATA
ATCTTGAATTCCAGTAACTCAGGTCCAGATAATCAATAATTTATTCATAGTTCTAATTAA
GGTTAGGTCACGAACACCCTGATCTTTAAAACGATGGTCGTAGCAGTGCTGAAAAAATCT
AGAAAAAGTCCGGGAATGTAAGGAAAGAAATTGAGTAGGTCTCCCATGAGGAAAGACAAA
TGATTGGATGTATTTAGTCTAGAAAGCAGGAGGCTGAGAAACAGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTTTTCTACCTGCTAGTCTACCCTTAAGTAAATATCCCGTTTGTTTCCATGAAGTGC
ATAATGAGCTGAATGAATGAAAACGTTAAGATGAATTTAAAAGCAAAATGCTCATGAATA
ATCTTGAATTCCAGTAACTCAGGTCCAGATAATCAATAATTTATTCATAGTTCTAATTAA
GGTTAGGTCACGAACACCCTGATCTTTAAAACGATGGTCGTAGCAGTGCTGAAAAAATCT
AGAAAAAGTCCGGGAATGTAAGGAAAGAAATTGAGTAGGTCTCCCATGAGGAAAGACAAA
TGATTGGATGTATTTAGTCTAGAAAGCAGGAGGCTGAGAAACAGTAAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               3-182, gnl|bosTau2|chr9 (57443372-57443192)
               

               
               3-182, gnl|canFam2|chr9 (20343449-20343800)
               

               
               3-182, gnl|echTel1|scaffold_39135 (314-682)
               

               
               3-182, gnl|hg17|chr17 (66524167-66524525)
               

               
               3-182, gnl|Hg17|chr17 (66524367-66524187)
               

               
               3-182, gnl|loxAfr1|scaffold_38880 (4398-4759)
               

               
               3-182, gnl|mm7|chr11 (111944278-111944637)
               

               
               3-182, gnl|Mm7|chr11 (111944477-111944298)
               

               
               3-182, gnl|oryCun1|scaffold_143517 (3183-3544)
               

               
               3-182, gnl|panTro1|chr19 (69846343-69846701)
               

               
               3-182, gnl|rheMac2|chr16 (66235814-66236173)
               

               
               3-182, gnl|rn3|chr10 (101366343-101366705)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-182, gnl|bosTau2|chr9 (57443372-57443192)
               

               
               3-182, gnl|canFam2|chr9 (20343449-20343800)
               

               
               3-182, gnl|echTel1|scaffold_39135 (314-682)
               

               
               3-182, gnl|hg17|chr17 (66524167-66524525)
               

               
               3-182, gnl|Hg17|chr17 (66524367-66524187)
               

               
               3-182, gnl|loxAfr1|scaffold_38880 (4398-4759)
               

               
               3-182, gnl|mm7|chr11 (111944278-111944637)
               

               
               3-182, gnl|Mm7|chr11 (111944477-111944298)
               

               
               3-182, gnl|oryCun1|scaffold_143517 (3183-3544)
               

               
               3-182, gnl|panTro1|chr19 (69846343-69846701)
               

               
               3-182, gnl|rheMac2|chr16 (66235814-66236173)
               

               
               3-182, gnl|rn3|chr10 (101366343-101366705)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	3-182, gnl\|bosTau2\|chr9 (57443372-57443192)
	3-182, gnl\|canFam2\|chr9 (20343449-20343800)
	3-182, gnl\|echTel1\|scaffold_39135 (314-682)
	3-182, gnl\|hg17\|chr17 (66524167-66524525)
	3-182, gnl\|Hg17\|chr17 (66524367-66524187)
	3-182, gnl\|loxAfr1\|scaffold_38880 (4398-4759)
	3-182, gnl\|mm7\|chr11 (111944278-111944637)
	3-182, gnl\|Mm7\|chr11 (111944477-111944298)
	3-182, gnl\|oryCun1\|scaffold_143517 (3183-3544)
	3-182, gnl\|panTro1\|chr19 (69846343-69846701)
	3-182, gnl\|rheMac2\|chr16 (66235814-66236173)
	3-182, gnl\|rn3\|chr10 (101366343-101366705)