Non-Coding RNA Search

rpigcf0_007830.y1

Sequence:


               
               TGCAGGAATTCGAATTCGTGGAGGCTAGCTCCCTCCTCCTATAGAGGAAGTCCAGCAGGA
GTTCTCTTTGCCCTCCTCAGGGCTTATAGGTGCTTTATTGTTGAGGTCTAAAGACTGCCA
GGAAGTTCTTGGTCTCCCCACCCAAGGCCCCTGCACAATAAGTGGGTTGTGCAGCTGCTC
TGGCTTTGAGAGTCCTTGAATGTGTATTCAGAGAGGCGGGGCTCTCCTGGGAAGAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAATTCGAATTCGTGGAGGCTAGCTCCCTCCTCCTATAGAGGAAGTCCAGCAGGA
GTTCTCTTTGCCCTCCTCAGGGCTTATAGGTGCTTTATTGTTGAGGTCTAAAGACTGCCA
GGAAGTTCTTGGTCTCCCCACCCAAGGCCCCTGCACAATAAGTGGGTTGTGCAGCTGCTC
TGGCTTTGAGAGTCCTTGAATGTGTATTCAGAGAGGCGGGGCTCTCCTGGGAAGAGGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               18-113, - strand, RNAz p=0.527831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-113, - strand, RNAz p=0.527831

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               18-239, gnl|bosTau2|chr13 (61017426-61017650)
               

               
               18-239, gnl|canFam2|chr11 (15148480-15149044)
               

               
               18-239, gnl|dasNov1|scaffold_3022 (79225-78659)
               

               
               18-239, gnl|echTel1|scaffold_291043 (50827-51365)
               

               
               18-239, gnl|hg17|chr5 (121546753-121547324)
               

               
               18-239, gnl|Hg17|chr5 (121546968-121547190)
               

               
               18-239, gnl|loxAfr1|scaffold_315 (62152-62719)
               

               
               18-239, gnl|mm7|chr18 (53044886-53045473)
               

               
               18-239, gnl|Mm7|chr18 (53045101-53045339)
               

               
               18-239, gnl|monDom2|scaffold_55 (4336069-4335474)
               

               
               18-239, gnl|oryCun1|scaffold_199963 (148879-148348)
               

               
               18-239, gnl|panTro1|chr4 (127808705-127809275)
               

               
               18-239, gnl|rheMac2|chr6 (118614167-118614743)
               

               
               18-239, gnl|rn3|chr18 (48066599-48067177)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-239, gnl|bosTau2|chr13 (61017426-61017650)
               

               
               18-239, gnl|canFam2|chr11 (15148480-15149044)
               

               
               18-239, gnl|dasNov1|scaffold_3022 (79225-78659)
               

               
               18-239, gnl|echTel1|scaffold_291043 (50827-51365)
               

               
               18-239, gnl|hg17|chr5 (121546753-121547324)
               

               
               18-239, gnl|Hg17|chr5 (121546968-121547190)
               

               
               18-239, gnl|loxAfr1|scaffold_315 (62152-62719)
               

               
               18-239, gnl|mm7|chr18 (53044886-53045473)
               

               
               18-239, gnl|Mm7|chr18 (53045101-53045339)
               

               
               18-239, gnl|monDom2|scaffold_55 (4336069-4335474)
               

               
               18-239, gnl|oryCun1|scaffold_199963 (148879-148348)
               

               
               18-239, gnl|panTro1|chr4 (127808705-127809275)
               

               
               18-239, gnl|rheMac2|chr6 (118614167-118614743)
               

               
               18-239, gnl|rn3|chr18 (48066599-48067177)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	18-239, gnl\|bosTau2\|chr13 (61017426-61017650)
	18-239, gnl\|canFam2\|chr11 (15148480-15149044)
	18-239, gnl\|dasNov1\|scaffold_3022 (79225-78659)
	18-239, gnl\|echTel1\|scaffold_291043 (50827-51365)
	18-239, gnl\|hg17\|chr5 (121546753-121547324)
	18-239, gnl\|Hg17\|chr5 (121546968-121547190)
	18-239, gnl\|loxAfr1\|scaffold_315 (62152-62719)
	18-239, gnl\|mm7\|chr18 (53044886-53045473)
	18-239, gnl\|Mm7\|chr18 (53045101-53045339)
	18-239, gnl\|monDom2\|scaffold_55 (4336069-4335474)
	18-239, gnl\|oryCun1\|scaffold_199963 (148879-148348)
	18-239, gnl\|panTro1\|chr4 (127808705-127809275)
	18-239, gnl\|rheMac2\|chr6 (118614167-118614743)
	18-239, gnl\|rn3\|chr18 (48066599-48067177)