Non-Coding RNA Search

rpigcf0_008222.y1

Sequence:


               
               TGTCCCCACCTAATGAAAAGGTAGTTTCCCAAACATATATTTTAAAGTCGAGAGTTTAGA
ATTCAGAAAGGAGGGATTGTTTATGGATTTCACTGAACCTTATTTCAAATGTTCTGGACT
TCCGTTCACCTTCCAGAAAGCCACACCTAACACAAGCCAGCTGTCCATATAGGTGAGAAC
ATCCCGCAAGAACATCTGCCTTGAATCAATGTCACCTTCATCTTTGAAAGACAGCCCCAA
TCTTGTTTCCACACCTCACTCTGCCAGGGACAGTAGAATTTAAAATAACCAGGAAGACAC
AGAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCCACCTAATGAAAAGGTAGTTTCCCAAACATATATTTTAAAGTCGAGAGTTTAGA
ATTCAGAAAGGAGGGATTGTTTATGGATTTCACTGAACCTTATTTCAAATGTTCTGGACT
TCCGTTCACCTTCCAGAAAGCCACACCTAACACAAGCCAGCTGTCCATATAGGTGAGAAC
ATCCCGCAAGAACATCTGCCTTGAATCAATGTCACCTTCATCTTTGAAAGACAGCCCCAA
TCTTGTTTCCACACCTCACTCTGCCAGGGACAGTAGAATTTAAAATAACCAGGAAGACAC
AGAGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-231, - strand, RNAz p=0.583472

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-231, - strand, RNAz p=0.583472

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               10-307, gnl|bosTau2|chr2 (11250477-11250163)
               

               
               10-307, gnl|canFam2|chr36 (23384303-23384879)
               

               
               10-307, gnl|dasNov1|scaffold_172 (110349-110888)
               

               
               10-307, gnl|echTel1|scaffold_304583 (2079-1517)
               

               
               10-307, gnl|hg17|chr2 (177260709-177261305)
               

               
               10-307, gnl|Hg17|chr2 (177261316-177261014)
               

               
               10-307, gnl|loxAfr1|scaffold_4230 (33850-33298)
               

               
               10-307, gnl|mm7|chr2 (74913456-74914012)
               

               
               10-307, gnl|Mm7|chr2 (74914006-74913729)
               

               
               10-307, gnl|oryCun1|scaffold_173330 (12033-11479)
               

               
               10-307, gnl|panTro1|chr13 (66913564-66914159)
               

               
               10-307, gnl|rheMac2|chr12 (40206960-40207555)
               

               
               10-307, gnl|rn3|chr3 (57635538-57636107)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-307, gnl|bosTau2|chr2 (11250477-11250163)
               

               
               10-307, gnl|canFam2|chr36 (23384303-23384879)
               

               
               10-307, gnl|dasNov1|scaffold_172 (110349-110888)
               

               
               10-307, gnl|echTel1|scaffold_304583 (2079-1517)
               

               
               10-307, gnl|hg17|chr2 (177260709-177261305)
               

               
               10-307, gnl|Hg17|chr2 (177261316-177261014)
               

               
               10-307, gnl|loxAfr1|scaffold_4230 (33850-33298)
               

               
               10-307, gnl|mm7|chr2 (74913456-74914012)
               

               
               10-307, gnl|Mm7|chr2 (74914006-74913729)
               

               
               10-307, gnl|oryCun1|scaffold_173330 (12033-11479)
               

               
               10-307, gnl|panTro1|chr13 (66913564-66914159)
               

               
               10-307, gnl|rheMac2|chr12 (40206960-40207555)
               

               
               10-307, gnl|rn3|chr3 (57635538-57636107)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	10-307, gnl\|bosTau2\|chr2 (11250477-11250163)
	10-307, gnl\|canFam2\|chr36 (23384303-23384879)
	10-307, gnl\|dasNov1\|scaffold_172 (110349-110888)
	10-307, gnl\|echTel1\|scaffold_304583 (2079-1517)
	10-307, gnl\|hg17\|chr2 (177260709-177261305)
	10-307, gnl\|Hg17\|chr2 (177261316-177261014)
	10-307, gnl\|loxAfr1\|scaffold_4230 (33850-33298)
	10-307, gnl\|mm7\|chr2 (74913456-74914012)
	10-307, gnl\|Mm7\|chr2 (74914006-74913729)
	10-307, gnl\|oryCun1\|scaffold_173330 (12033-11479)
	10-307, gnl\|panTro1\|chr13 (66913564-66914159)
	10-307, gnl\|rheMac2\|chr12 (40206960-40207555)
	10-307, gnl\|rn3\|chr3 (57635538-57636107)