Non-Coding RNA Search

rpigcf0_010247.y1

Sequence:


               
               ATTCTAGAAAACTATTCACTTTTTTCTATAGCAGATTTTCCTAGAAGTGCTATAAAATCC
TGAAGGCTTAACAGCTTTATAACACTGATAATTAATAATATGAAGACTGCAAACTGGTCA
CTGAGTCAATAGGAAAGCACATGAGTATTCATTTTATTGTCTGAAAGGAAATTAAGAGCT
TTATAAACCTTAGTTTATAAGCATATCTAGCTCAAGAGTATAGGTCCTACTTTTCACTTC
TAGATAAATTCTTCCCTTCAGGCAAATTGAATATATAGGATACTCTTCCTGGAAAAAGAG
CTGTGATCATTCCTCAACGTTGTAAGAAAGGGGACAACTGCAAACAAGACTGAGGTTGGA
AATGCATTTCTGCTTCTTGCCTTTGAGCTTGGGACAGTTCTCTAAGAACGGCCGACTCAG
CACAGAAAGTGGTAAGAGCAGTGAAATGGCAAGCGGACGATTACCTAGGCAGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTAGAAAACTATTCACTTTTTTCTATAGCAGATTTTCCTAGAAGTGCTATAAAATCC
TGAAGGCTTAACAGCTTTATAACACTGATAATTAATAATATGAAGACTGCAAACTGGTCA
CTGAGTCAATAGGAAAGCACATGAGTATTCATTTTATTGTCTGAAAGGAAATTAAGAGCT
TTATAAACCTTAGTTTATAAGCATATCTAGCTCAAGAGTATAGGTCCTACTTTTCACTTC
TAGATAAATTCTTCCCTTCAGGCAAATTGAATATATAGGATACTCTTCCTGGAAAAAGAG
CTGTGATCATTCCTCAACGTTGTAAGAAAGGGGACAACTGCAAACAAGACTGAGGTTGGA
AATGCATTTCTGCTTCTTGCCTTTGAGCTTGGGACAGTTCTCTAAGAACGGCCGACTCAG
CACAGAAAGTGGTAAGAGCAGTGAAATGGCAAGCGGACGATTACCTAGGCAGGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-278, - strand, RNAz p=0.816092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.816092

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               8-284, gnl|bosTau2|chr6 (57954602-57954327)
               

               
               8-284, gnl|Hg17|chr4 (85988689-85988944)
               


               
               289-440, gnl|bosTau2|chr6 (57954114-57953963)
               

               
               289-440, gnl|canFam2|chr32 (11433644-11433882)
               

               
               289-440, gnl|dasNov1|scaffold_110073 (7098-7344)
               

               
               289-440, gnl|hg17|chr4 (85988946-85989180)
               

               
               289-440, gnl|Hg17|chr4 (85988950-85989112)
               

               
               289-440, gnl|monDom2|scaffold_37 (18720972-18721210)
               

               
               289-440, gnl|oryCun1|scaffold_127515 (1994-1762)
               

               
               289-440, gnl|panTro1|chr3 (47691213-47690979)
               

               
               289-440, gnl|rheMac2|chr5 (44811615-44811381)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-284, gnl|bosTau2|chr6 (57954602-57954327)
               

               
               8-284, gnl|Hg17|chr4 (85988689-85988944)
               


               
               289-440, gnl|bosTau2|chr6 (57954114-57953963)
               

               
               289-440, gnl|canFam2|chr32 (11433644-11433882)
               

               
               289-440, gnl|dasNov1|scaffold_110073 (7098-7344)
               

               
               289-440, gnl|hg17|chr4 (85988946-85989180)
               

               
               289-440, gnl|Hg17|chr4 (85988950-85989112)
               

               
               289-440, gnl|monDom2|scaffold_37 (18720972-18721210)
               

               
               289-440, gnl|oryCun1|scaffold_127515 (1994-1762)
               

               
               289-440, gnl|panTro1|chr3 (47691213-47690979)
               

               
               289-440, gnl|rheMac2|chr5 (44811615-44811381)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	8-284, gnl\|bosTau2\|chr6 (57954602-57954327)
	8-284, gnl\|Hg17\|chr4 (85988689-85988944)

	289-440, gnl\|bosTau2\|chr6 (57954114-57953963)
	289-440, gnl\|canFam2\|chr32 (11433644-11433882)
	289-440, gnl\|dasNov1\|scaffold_110073 (7098-7344)
	289-440, gnl\|hg17\|chr4 (85988946-85989180)
	289-440, gnl\|Hg17\|chr4 (85988950-85989112)
	289-440, gnl\|monDom2\|scaffold_37 (18720972-18721210)
	289-440, gnl\|oryCun1\|scaffold_127515 (1994-1762)
	289-440, gnl\|panTro1\|chr3 (47691213-47690979)
	289-440, gnl\|rheMac2\|chr5 (44811615-44811381)