Non-Coding RNA Search

rpigcf0_011432.y1

Sequence:


               
               ATCGAATCTCTTTGGGTTGAAGTGAACCCTTATGTTTAAAAAAAAAAAAAAGTAATTCTG
TTTCATTCACCTAAATTTTAACTGGTGTTTTGGGACAAAAATGCCTGCTGGGAGAGGAAA
CTTATTGGACAAATTCCCACGCTCTGAATTGGACAGAAAGTCTCTAACTGCTCAGGGAAC
CAGTGCAGAGAAGCCGAGAACAGCAGTCAGGGCTGTTGGAGCCTCTCAATGTCCCAGCCA
CCTGGGTTGAGTCAAAGCGTGTTTATGCGCCTTGATCTCGGCTTATGTGTAAGATACCAT
GTTAACGGTCCTGTTGCCCACTCCGCCCTGGCTTGAGATTTAAATAAAAACAAATTACAG
GTCTTAACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGAATCTCTTTGGGTTGAAGTGAACCCTTATGTTTAAAAAAAAAAAAAAGTAATTCTG
TTTCATTCACCTAAATTTTAACTGGTGTTTTGGGACAAAAATGCCTGCTGGGAGAGGAAA
CTTATTGGACAAATTCCCACGCTCTGAATTGGACAGAAAGTCTCTAACTGCTCAGGGAAC
CAGTGCAGAGAAGCCGAGAACAGCAGTCAGGGCTGTTGGAGCCTCTCAATGTCCCAGCCA
CCTGGGTTGAGTCAAAGCGTGTTTATGCGCCTTGATCTCGGCTTATGTGTAAGATACCAT
GTTAACGGTCCTGTTGCCCACTCCGCCCTGGCTTGAGATTTAAATAAAAACAAATTACAG
GTCTTAACAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               108-203, - strand, RNAz p=0.964121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-203, - strand, RNAz p=0.964121

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               108-373, gnl|bosTau2|chr21 (6146591-6146328)
               

               
               108-373, gnl|canFam2|chr3 (46620724-46620375)
               

               
               108-373, gnl|dasNov1|scaffold_313 (73499-73139)
               

               
               108-373, gnl|echTel1|scaffold_296814 (8101-7719)
               

               
               108-373, gnl|galGal2|chr10 (16546755-16547120)
               

               
               108-373, gnl|hg17|chr15 (95072788-95073146)
               

               
               108-373, gnl|Hg17|chr15 (95073105-95072815)
               

               
               108-373, gnl|loxAfr1|scaffold_10159 (29297-28916)
               

               
               108-373, gnl|mm7|chr7 (65822118-65821753)
               

               
               108-373, gnl|Mm7|chr7 (65821814-65822089)
               

               
               108-373, gnl|monDom2|scaffold_12 (64957705-64957362)
               

               
               108-373, gnl|panTro1|chr16 (96098119-96098479)
               

               
               108-373, gnl|rheMac2|chr7 (76635037-76635397)
               

               
               108-373, gnl|rn3|chr1 (124976685-124976319)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-373, gnl|bosTau2|chr21 (6146591-6146328)
               

               
               108-373, gnl|canFam2|chr3 (46620724-46620375)
               

               
               108-373, gnl|dasNov1|scaffold_313 (73499-73139)
               

               
               108-373, gnl|echTel1|scaffold_296814 (8101-7719)
               

               
               108-373, gnl|galGal2|chr10 (16546755-16547120)
               

               
               108-373, gnl|hg17|chr15 (95072788-95073146)
               

               
               108-373, gnl|Hg17|chr15 (95073105-95072815)
               

               
               108-373, gnl|loxAfr1|scaffold_10159 (29297-28916)
               

               
               108-373, gnl|mm7|chr7 (65822118-65821753)
               

               
               108-373, gnl|Mm7|chr7 (65821814-65822089)
               

               
               108-373, gnl|monDom2|scaffold_12 (64957705-64957362)
               

               
               108-373, gnl|panTro1|chr16 (96098119-96098479)
               

               
               108-373, gnl|rheMac2|chr7 (76635037-76635397)
               

               
               108-373, gnl|rn3|chr1 (124976685-124976319)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	108-373, gnl\|bosTau2\|chr21 (6146591-6146328)
	108-373, gnl\|canFam2\|chr3 (46620724-46620375)
	108-373, gnl\|dasNov1\|scaffold_313 (73499-73139)
	108-373, gnl\|echTel1\|scaffold_296814 (8101-7719)
	108-373, gnl\|galGal2\|chr10 (16546755-16547120)
	108-373, gnl\|hg17\|chr15 (95072788-95073146)
	108-373, gnl\|Hg17\|chr15 (95073105-95072815)
	108-373, gnl\|loxAfr1\|scaffold_10159 (29297-28916)
	108-373, gnl\|mm7\|chr7 (65822118-65821753)
	108-373, gnl\|Mm7\|chr7 (65821814-65822089)
	108-373, gnl\|monDom2\|scaffold_12 (64957705-64957362)
	108-373, gnl\|panTro1\|chr16 (96098119-96098479)
	108-373, gnl\|rheMac2\|chr7 (76635037-76635397)
	108-373, gnl\|rn3\|chr1 (124976685-124976319)