Non-Coding RNA Search

rpigcf0_013340.y1

Sequence:


               
               TCCCTGATTCTCTGTGGGTGGCACAAGAGGGCCGTGTTGCTGGATGCACCCCAGACTTAA
TTGCTGCCGGATTTAGAGCCGCAGACATGGCCTTGGTCATCCATAGGCACACGTGATGGA
TGGCCACCCCGGCAGTCTGCTCTGCCATCCATCTCTCTGGGAAAACAACGGTGATTGCTG
GAGAGAGTGGCGCTGACATCAGCAGAAATGACCGCAAGAGTCAGATGAAACGGCGGCAGA
GGAGGGAATCTGGACTCGAATCTGCTCTCTGAGGCCTTTTGTGAATGAGGGCAATTCTAG
TTACTTTGGTCTACACACTTTGCAGATCTTTCAGCCCGAAGAAAATGGCAGATCTCTAGG
GACAGGCAGCCACGAAAGTTTCGCAGAGCCCACAAGTCAACAATATGGATTATTTAACTT
TCTTCACCTTCTTAAAGATGGAAACTCAAACTGAGGCAAATTGTATCCACACCAGTCCAT
CAGATGCTGGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGATTCTCTGTGGGTGGCACAAGAGGGCCGTGTTGCTGGATGCACCCCAGACTTAA
TTGCTGCCGGATTTAGAGCCGCAGACATGGCCTTGGTCATCCATAGGCACACGTGATGGA
TGGCCACCCCGGCAGTCTGCTCTGCCATCCATCTCTCTGGGAAAACAACGGTGATTGCTG
GAGAGAGTGGCGCTGACATCAGCAGAAATGACCGCAAGAGTCAGATGAAACGGCGGCAGA
GGAGGGAATCTGGACTCGAATCTGCTCTCTGAGGCCTTTTGTGAATGAGGGCAATTCTAG
TTACTTTGGTCTACACACTTTGCAGATCTTTCAGCCCGAAGAAAATGGCAGATCTCTAGG
GACAGGCAGCCACGAAAGTTTCGCAGAGCCCACAAGTCAACAATATGGATTATTTAACTT
TCTTCACCTTCTTAAAGATGGAAACTCAAACTGAGGCAAATTGTATCCACACCAGTCCAT
CAGATGCTGGGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-246, + strand, RNAz p=0.916401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-246, + strand, RNAz p=0.916401

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-246, gnl|bosTau2|chr12 (29982891-29982646)
               

               
               1-246, gnl|Hg17|chr13 (78412587-78412826)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr12 (29982891-29982646)
               

               
               1-246, gnl|Hg17|chr13 (78412587-78412826)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-246, gnl\|bosTau2\|chr12 (29982891-29982646)
	1-246, gnl\|Hg17\|chr13 (78412587-78412826)