Non-Coding RNA Search

rpigcf0_017676.y1

Sequence:


               
               GGAATCGAATCCATCCAGGTGATTGACTAGATGTCTCCTTTATCAACTGCTTGTTTTGGC
ATCATTTAGACATAGCCTTTGTGTCCTCTTTTTCTCCTTTTATTGAGTATGCTCTAATTG
CTTTTGTATTATCTTTTTTGGTATGCTTCTAGCCTCTTCCTTCCACTTTTGATTGTTTAA
ACAGTTCTATTTATAAATGCATTCTTCAATTGACCTGTATGATATGTGTTCTAAGTGGTT
TAGCACAAAGTATATAGGCTTTGACTTGCTATTCAAAGTCTGTGCTCAAATAACTTGAGC
CAAAGTTTGAAGTGGAATAAGATTCAAGGTCACGTGTACTAACTTGTTTATTTTTTATAT
CTGAGCCAGCTTTCTAGTATTTTTAGAAAATACATGTGTGACAGCAGAGGGAAAATAAAG
TTGATTATCAAATATTCAGGTACTGATACCTTCTTTATAACTTCATCTTCATCCTGCTTT
TCTTAGATTCCATGGTTATCACATCCGTCTGACAAAGCCTAGGGCTGATGAAACACATTT
TCTTTTTACTTTCTAAGAGCACCTGAACATCCAAACTTGGCAAAATAAAAGCACAGTGGT
GTTCAAACTGGACTTAATTTAAATCTTGAAGGGTCACCTCAACACTTCCAGAACACCACT
GTACTACTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCGAATCCATCCAGGTGATTGACTAGATGTCTCCTTTATCAACTGCTTGTTTTGGC
ATCATTTAGACATAGCCTTTGTGTCCTCTTTTTCTCCTTTTATTGAGTATGCTCTAATTG
CTTTTGTATTATCTTTTTTGGTATGCTTCTAGCCTCTTCCTTCCACTTTTGATTGTTTAA
ACAGTTCTATTTATAAATGCATTCTTCAATTGACCTGTATGATATGTGTTCTAAGTGGTT
TAGCACAAAGTATATAGGCTTTGACTTGCTATTCAAAGTCTGTGCTCAAATAACTTGAGC
CAAAGTTTGAAGTGGAATAAGATTCAAGGTCACGTGTACTAACTTGTTTATTTTTTATAT
CTGAGCCAGCTTTCTAGTATTTTTAGAAAATACATGTGTGACAGCAGAGGGAAAATAAAG
TTGATTATCAAATATTCAGGTACTGATACCTTCTTTATAACTTCATCTTCATCCTGCTTT
TCTTAGATTCCATGGTTATCACATCCGTCTGACAAAGCCTAGGGCTGATGAAACACATTT
TCTTTTTACTTTCTAAGAGCACCTGAACATCCAAACTTGGCAAAATAAAAGCACAGTGGT
GTTCAAACTGGACTTAATTTAAATCTTGAAGGGTCACCTCAACACTTCCAGAACACCACT
GTACTACTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               91-209, + strand, RNAz p=0.735484

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-209, + strand, RNAz p=0.735484

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-666, gnl|bosTau2|chr9 (12164603-12163936)
               

               
               12-666, gnl|Hg17|chr6 (126963235-126964306)
               

               
               12-666, gnl|Mm7|chr10 (29818282-29817655)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-666, gnl|bosTau2|chr9 (12164603-12163936)
               

               
               12-666, gnl|Hg17|chr6 (126963235-126964306)
               

               
               12-666, gnl|Mm7|chr10 (29818282-29817655)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	12-666, gnl\|bosTau2\|chr9 (12164603-12163936)
	12-666, gnl\|Hg17\|chr6 (126963235-126964306)
	12-666, gnl\|Mm7\|chr10 (29818282-29817655)