Non-Coding RNA Search

rpigcf0_020254.y1

Sequence:


               
               CCTTACACATTATTATTCCTTAGACATTTTATATGTCTGTCTGAAAATGTGCCATCTTTC
TTCACCTGCCAACTAACAGATGTTATTAGTTGACGAATCTGCTGATTGCACTGGTACTAA
GTTATGGCTTTTGAACACTCAACTTGAATTGTTCTCACTCTCATATATGGGAGTTACTCT
TGGTGAAAGGCAGTTGAATTTTCTAGAGCAAACAGAAATTTGGAGTGTGCCCATGGAGCA
GGACTCATGGAATCAGATTGTTAGAGGGAACTTGGCATGCCTCCAGGTCTCTGTTAAGGG
GCTTTGGCCGCTGCCTTGGGGAGTGTCTGCCCTTTGGTGGTGTCACCAGAGTCCAAATGC
TTGGATGCAGGATCACCTGTCCAGGTGATCCTTGTTTATTAACAATTCACAAGAATCAGA
CTCATTGGGATTGGTTAATAAGCCAGAATACCAATGTATTACTCTTTTGGTGAAGGCTAT
ATTTACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTACACATTATTATTCCTTAGACATTTTATATGTCTGTCTGAAAATGTGCCATCTTTC
TTCACCTGCCAACTAACAGATGTTATTAGTTGACGAATCTGCTGATTGCACTGGTACTAA
GTTATGGCTTTTGAACACTCAACTTGAATTGTTCTCACTCTCATATATGGGAGTTACTCT
TGGTGAAAGGCAGTTGAATTTTCTAGAGCAAACAGAAATTTGGAGTGTGCCCATGGAGCA
GGACTCATGGAATCAGATTGTTAGAGGGAACTTGGCATGCCTCCAGGTCTCTGTTAAGGG
GCTTTGGCCGCTGCCTTGGGGAGTGTCTGCCCTTTGGTGGTGTCACCAGAGTCCAAATGC
TTGGATGCAGGATCACCTGTCCAGGTGATCCTTGTTTATTAACAATTCACAAGAATCAGA
CTCATTGGGATTGGTTAATAAGCCAGAATACCAATGTATTACTCTTTTGGTGAAGGCTAT
ATTTACAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-465, + strand, RNAz p=0.995039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-465, + strand, RNAz p=0.995039

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               24-487, gnl|bosTau2|chr11 (33259668-33260106)
               

               
               24-487, gnl|echTel1|scaffold_305457 (740-1368)
               

               
               24-487, gnl|hg17|chr2 (113342877-113343647)
               

               
               24-487, gnl|Hg17|chr2 (113343259-113343753)
               

               
               24-487, gnl|loxAfr1|scaffold_63536 (29694-28961)
               

               
               24-487, gnl|mm7|chr2 (129132751-129133466)
               

               
               24-487, gnl|Mm7|chr2 (129133127-129133563)
               

               
               24-487, gnl|oryCun1|scaffold_187539 (2168-1415)
               

               
               24-487, gnl|panTro1|chr12 (116482992-116483759)
               

               
               24-487, gnl|rheMac2|chr13 (112241467-112242237)
               

               
               24-487, gnl|rn3|chr3 (116894802-116895506)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-487, gnl|bosTau2|chr11 (33259668-33260106)
               

               
               24-487, gnl|echTel1|scaffold_305457 (740-1368)
               

               
               24-487, gnl|hg17|chr2 (113342877-113343647)
               

               
               24-487, gnl|Hg17|chr2 (113343259-113343753)
               

               
               24-487, gnl|loxAfr1|scaffold_63536 (29694-28961)
               

               
               24-487, gnl|mm7|chr2 (129132751-129133466)
               

               
               24-487, gnl|Mm7|chr2 (129133127-129133563)
               

               
               24-487, gnl|oryCun1|scaffold_187539 (2168-1415)
               

               
               24-487, gnl|panTro1|chr12 (116482992-116483759)
               

               
               24-487, gnl|rheMac2|chr13 (112241467-112242237)
               

               
               24-487, gnl|rn3|chr3 (116894802-116895506)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	24-487, gnl\|bosTau2\|chr11 (33259668-33260106)
	24-487, gnl\|echTel1\|scaffold_305457 (740-1368)
	24-487, gnl\|hg17\|chr2 (113342877-113343647)
	24-487, gnl\|Hg17\|chr2 (113343259-113343753)
	24-487, gnl\|loxAfr1\|scaffold_63536 (29694-28961)
	24-487, gnl\|mm7\|chr2 (129132751-129133466)
	24-487, gnl\|Mm7\|chr2 (129133127-129133563)
	24-487, gnl\|oryCun1\|scaffold_187539 (2168-1415)
	24-487, gnl\|panTro1\|chr12 (116482992-116483759)
	24-487, gnl\|rheMac2\|chr13 (112241467-112242237)
	24-487, gnl\|rn3\|chr3 (116894802-116895506)