Non-Coding RNA Search

rpigcf0_021280.y1

Sequence:


               
               ACCACACACTCTTGTCATAAAATTCAGTAGAACTGGTTTCTGGTTTTCTCCCACTCTCTG
TCTTCCATCCTCTCAGAGAGTCAAAAAAGGAATCAAACTGGGGCAATGGGGGGCTAAGTG
ACTCCAGAAGAATCCTCCTAGCATCACATAGAACTGCAACTGTGACATTTCATTCTAGGC
CAGGCTTGCTGCCAAGTCCCACAGAAAGCAAATACAGACCTGGTGTTTTAGCCACAAGTT
AGCCCTGAAACGCGGATGCCCTACTAGTGATGTGTAAACCATTATTATTGTTGGTACCGT
TGCTACTTCATTTGGTACTAGGTAGAGGCAGTTTTTGGAGGGGGGCTTTCGGATATCACT
AGCCAACAGCGGTTCATTCATTCATTCCTTCATTTTGCCAGCCACAGTCTTATCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACACACTCTTGTCATAAAATTCAGTAGAACTGGTTTCTGGTTTTCTCCCACTCTCTG
TCTTCCATCCTCTCAGAGAGTCAAAAAAGGAATCAAACTGGGGCAATGGGGGGCTAAGTG
ACTCCAGAAGAATCCTCCTAGCATCACATAGAACTGCAACTGTGACATTTCATTCTAGGC
CAGGCTTGCTGCCAAGTCCCACAGAAAGCAAATACAGACCTGGTGTTTTAGCCACAAGTT
AGCCCTGAAACGCGGATGCCCTACTAGTGATGTGTAAACCATTATTATTGTTGGTACCGT
TGCTACTTCATTTGGTACTAGGTAGAGGCAGTTTTTGGAGGGGGGCTTTCGGATATCACT
AGCCAACAGCGGTTCATTCATTCATTCCTTCATTTTGCCAGCCACAGTCTTATCCTCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-319, gnl|bosTau2|chr20 (23669359-23669672)
               

               
               1-319, gnl|canFam2|chr4 (74038237-74037832)
               

               
               1-319, gnl|echTel1|scaffold_289083 (55502-55041)
               

               
               1-319, gnl|hg17|chr5 (38007231-38007644)
               

               
               1-319, gnl|Hg17|chr5 (38007340-38007643)
               

               
               1-319, gnl|loxAfr1|scaffold_10690 (23653-23232)
               

               
               1-319, gnl|mm7|chr15 (7491093-7490664)
               

               
               1-319, gnl|Mm7|chr15 (7490980-7490651)
               

               
               1-319, gnl|monDom2|scaffold_20 (34062732-34062316)
               

               
               1-319, gnl|panTro1|chr4 (78741603-78741190)
               

               
               1-319, gnl|rheMac2|chr6 (37810755-37811168)
               

               
               1-319, gnl|rn3|chr2 (57186580-57186183)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr20 (23669359-23669672)
               

               
               1-319, gnl|canFam2|chr4 (74038237-74037832)
               

               
               1-319, gnl|echTel1|scaffold_289083 (55502-55041)
               

               
               1-319, gnl|hg17|chr5 (38007231-38007644)
               

               
               1-319, gnl|Hg17|chr5 (38007340-38007643)
               

               
               1-319, gnl|loxAfr1|scaffold_10690 (23653-23232)
               

               
               1-319, gnl|mm7|chr15 (7491093-7490664)
               

               
               1-319, gnl|Mm7|chr15 (7490980-7490651)
               

               
               1-319, gnl|monDom2|scaffold_20 (34062732-34062316)
               

               
               1-319, gnl|panTro1|chr4 (78741603-78741190)
               

               
               1-319, gnl|rheMac2|chr6 (37810755-37811168)
               

               
               1-319, gnl|rn3|chr2 (57186580-57186183)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-319, gnl\|bosTau2\|chr20 (23669359-23669672)
	1-319, gnl\|canFam2\|chr4 (74038237-74037832)
	1-319, gnl\|echTel1\|scaffold_289083 (55502-55041)
	1-319, gnl\|hg17\|chr5 (38007231-38007644)
	1-319, gnl\|Hg17\|chr5 (38007340-38007643)
	1-319, gnl\|loxAfr1\|scaffold_10690 (23653-23232)
	1-319, gnl\|mm7\|chr15 (7491093-7490664)
	1-319, gnl\|Mm7\|chr15 (7490980-7490651)
	1-319, gnl\|monDom2\|scaffold_20 (34062732-34062316)
	1-319, gnl\|panTro1\|chr4 (78741603-78741190)
	1-319, gnl\|rheMac2\|chr6 (37810755-37811168)
	1-319, gnl\|rn3\|chr2 (57186580-57186183)