Non-Coding RNA Search

rplac_10363.y1

Sequence:


               
               CCTAAACACAGAAACTCTTGGAGTCCCGGAACACATATCATCATAACAGAAGATGAGGTT
ATAGAGCTTAGAATTCCAAAAGATGAAGATGGAAGGAAAGGAAATAAAGATGAGAGCCAA
GAAAAGGGGAGTAGAGCAGCTTCTAAGGATCCCCCACCACCGTGGGGCTCTCAGGGCACC
CGAAATCAAGACCACATTCAAGTTAGCAAGCAGCATATTAATAACCCACAACAACCACCT
CAGTTACGCTGGAGAAGCAATTCTCTCAATAATGGCCAACCGAAAAGTACGCGCTGCCAG
GCGTCTGCTTCCTCAGAATCACTAACCTCCCACAGTGTTCACCCCACTCCTGACCTGCAG
ACTTTACAGGCAAAACGCCACATTCCTCAGCATCGTCAGTCTTACTGTAATTATAACACT
GGAGGTCAGGTAGAGGGTGGTGCAGCCAGTCCCTGTCAGAAGCAGACTGACAAACCCAAC
CAATGTAGTCAGTTCGTGACCCCTCCAAGAATGAGGCGACAGTTCTCAGCACCCAATCTC
AAAACTGGTCGAGAAACCACAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAACACAGAAACTCTTGGAGTCCCGGAACACATATCATCATAACAGAAGATGAGGTT
ATAGAGCTTAGAATTCCAAAAGATGAAGATGGAAGGAAAGGAAATAAAGATGAGAGCCAA
GAAAAGGGGAGTAGAGCAGCTTCTAAGGATCCCCCACCACCGTGGGGCTCTCAGGGCACC
CGAAATCAAGACCACATTCAAGTTAGCAAGCAGCATATTAATAACCCACAACAACCACCT
CAGTTACGCTGGAGAAGCAATTCTCTCAATAATGGCCAACCGAAAAGTACGCGCTGCCAG
GCGTCTGCTTCCTCAGAATCACTAACCTCCCACAGTGTTCACCCCACTCCTGACCTGCAG
ACTTTACAGGCAAAACGCCACATTCCTCAGCATCGTCAGTCTTACTGTAATTATAACACT
GGAGGTCAGGTAGAGGGTGGTGCAGCCAGTCCCTGTCAGAAGCAGACTGACAAACCCAAC
CAATGTAGTCAGTTCGTGACCCCTCCAAGAATGAGGCGACAGTTCTCAGCACCCAATCTC
AAAACTGGTCGAGAAACCACAGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H8Z3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H8Z3_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.718927
               

               
               240-439, - strand, RNAz p=0.84502

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.718927
               

               
               240-439, - strand, RNAz p=0.84502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr16 (31747592-31748154)
               

               
               1-563, gnl|Hg17|chr1 (10298405-10298967)
               

               
               1-563, gnl|Mm7|chr4 (148227107-148226554)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr16 (31747592-31748154)
               

               
               1-563, gnl|Hg17|chr1 (10298405-10298967)
               

               
               1-563, gnl|Mm7|chr4 (148227107-148226554)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	80-199, - strand, RNAz p=0.718927
	240-439, - strand, RNAz p=0.84502

	1-563, gnl\|bosTau2\|chr16 (31747592-31748154)
	1-563, gnl\|Hg17\|chr1 (10298405-10298967)
	1-563, gnl\|Mm7\|chr4 (148227107-148226554)