rplac_10864.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTCTCGCTGCCCACAGATTGCACCCTGATTCTGCTGACCTGCTGTCTGCCCTGAGCC AGGAGGAGCAAGACCTCATTGGGCCAGTGGTGGCCCTTGGGTATCCCCTGCACAGGGCCA TCGTGGCTCTGCAGAAGACAGGGCGGCAGAGCCTGAGCCAGTTTCTCAGCTACCTTAGTG CCTGTGACCGGCTGCTGCGACAAGGCTACGAAGAGGGCCTGGTGGAGGAGGCCATGGAGA TGTTCCAGTTCTCTGAGAGCCAGGCAGGGGAGTTCCTGCGCCTCTCAGAGCAGTTCAGCG ACATGGGCTTCCACAAGGACCGGATCAAAGAGGTGTTGCTGGTCCATGGCAACCGCCGTG AGCAAGCTCTGGAAGAGCTGGTGGCCTGTGCCCAGTGACTCTGGGGCACCCTGCAGTGCC CTGCATTCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTCTCGCTGCCCACAGATTGCACCCTGATTCTGCTGACCTGCTGTCTGCCCTGAGCC AGGAGGAGCAAGACCTCATTGGGCCAGTGGTGGCCCTTGGGTATCCCCTGCACAGGGCCA TCGTGGCTCTGCAGAAGACAGGGCGGCAGAGCCTGAGCCAGTTTCTCAGCTACCTTAGTG CCTGTGACCGGCTGCTGCGACAAGGCTACGAAGAGGGCCTGGTGGAGGAGGCCATGGAGA TGTTCCAGTTCTCTGAGAGCCAGGCAGGGGAGTTCCTGCGCCTCTCAGAGCAGTTCAGCG ACATGGGCTTCCACAAGGACCGGATCAAAGAGGTGTTGCTGGTCCATGGCAACCGCCGTG AGCAAGCTCTGGAAGAGCTGGTGGCCTGTGCCCAGTGACTCTGGGGCACCCTGCAGTGCC CTGCATTCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 37-161, + strand, RNAz p=0.830335 | |
| 41-161, + strand, RNAz p=0.829629 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 37-161, + strand, RNAz p=0.830335 | |
| 41-161, + strand, RNAz p=0.829629 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-161, gnl|bosTau2|chr10 (8480614-8480455) | |
| 1-161, gnl|canFam2|chr30 (32476100-32476210) | |
| 1-161, gnl|danRer3|chr16 (42268612-42268506) | |
| 1-161, gnl|dasNov1|scaffold_53572 (3307-3202) | |
| 1-161, gnl|echTel1|scaffold_42338 (844-950) | |
| 1-161, gnl|fr1|chrUn (158199560-158199666) | |
| 1-161, gnl|galGal2|chr10 (18442108-18442002) | |
| 1-161, gnl|hg17|chr15 (63178892-63178998) | |
| 1-161, gnl|Hg17|chr15 (63179059-63178896) | |
| 1-161, gnl|loxAfr1|scaffold_64094 (32328-32222) | |
| 1-161, gnl|mm7|chr9 (65403606-65403500) | |
| 1-161, gnl|Mm7|chr9 (65403437-65403600) | |
| 1-161, gnl|monDom2|scaffold_12 (48149406-48149300) | |
| 1-161, gnl|oryCun1|scaffold_114848 (2514-2620) | |
| 1-161, gnl|panTro1|chr16 (63650395-63650501) | |
| 1-161, gnl|rheMac2|chr7 (43571244-43571350) | |
| 1-161, gnl|rn3|chr8 (69639102-69638996) | |
| 1-161, gnl|tetNig1|chr13 (12249603-12249497) | |
| 1-161, gnl|xenTro1|scaffold_208 (541972-542077) | |
| 261-426, gnl|bosTau2|chr10 (8472490-8472323) | |
| 261-426, gnl|Hg17|chr15 (63172625-63172458) | |
| 261-426, gnl|Mm7|chr9 (65407438-65407575) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-161, gnl|bosTau2|chr10 (8480614-8480455) | |
| 1-161, gnl|canFam2|chr30 (32476100-32476210) | |
| 1-161, gnl|danRer3|chr16 (42268612-42268506) | |
| 1-161, gnl|dasNov1|scaffold_53572 (3307-3202) | |
| 1-161, gnl|echTel1|scaffold_42338 (844-950) | |
| 1-161, gnl|fr1|chrUn (158199560-158199666) | |
| 1-161, gnl|galGal2|chr10 (18442108-18442002) | |
| 1-161, gnl|hg17|chr15 (63178892-63178998) | |
| 1-161, gnl|Hg17|chr15 (63179059-63178896) | |
| 1-161, gnl|loxAfr1|scaffold_64094 (32328-32222) | |
| 1-161, gnl|mm7|chr9 (65403606-65403500) | |
| 1-161, gnl|Mm7|chr9 (65403437-65403600) | |
| 1-161, gnl|monDom2|scaffold_12 (48149406-48149300) | |
| 1-161, gnl|oryCun1|scaffold_114848 (2514-2620) | |
| 1-161, gnl|panTro1|chr16 (63650395-63650501) | |
| 1-161, gnl|rheMac2|chr7 (43571244-43571350) | |
| 1-161, gnl|rn3|chr8 (69639102-69638996) | |
| 1-161, gnl|tetNig1|chr13 (12249603-12249497) | |
| 1-161, gnl|xenTro1|scaffold_208 (541972-542077) | |
| 261-426, gnl|bosTau2|chr10 (8472490-8472323) | |
| 261-426, gnl|Hg17|chr15 (63172625-63172458) | |
| 261-426, gnl|Mm7|chr9 (65407438-65407575) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |