Non-Coding RNA Search

rplac_11240.y1

Sequence:


               
               TTCCCTGTTCTCCAGCCTAGTGGTTCACTTTCTCCCCTCCCCCCATTTGTTTATATTTGT
ACAGTGTCTGATCCTGAAATCACCAGATTAACTAACACCTTAGGCTTTAAAAAAATAGTG
CGCAAATGATAATAAATCGCCGCTCCTGGTCATCCTGGGGCAATGCCACCCTTTGATTTA
AAAGGAAGCAACCCCCTTCCCTCACCACTAAGAAAAAGAGAGCAATCCCCTCCCTCCCCA
GTGCCCTCCTTTAACTTCCTTTGTTGCTCTTGGTAACATTTTTTTTTTCCTGTGGAAGGA
GGAGAAATTATGAAAAAACTAATAACTTTATGTCCTCTTGATGTATTAGAAAATTTCCAA
GCATGGTATCATCTCAGTTTTCTAATTTGCAGGTTGGAACAGGTGACAGTCCCCTGCTGG
GACAGAGAATTGGGTTCTGATAGACTCTGTGCCACACTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTGTTCTCCAGCCTAGTGGTTCACTTTCTCCCCTCCCCCCATTTGTTTATATTTGT
ACAGTGTCTGATCCTGAAATCACCAGATTAACTAACACCTTAGGCTTTAAAAAAATAGTG
CGCAAATGATAATAAATCGCCGCTCCTGGTCATCCTGGGGCAATGCCACCCTTTGATTTA
AAAGGAAGCAACCCCCTTCCCTCACCACTAAGAAAAAGAGAGCAATCCCCTCCCTCCCCA
GTGCCCTCCTTTAACTTCCTTTGTTGCTCTTGGTAACATTTTTTTTTTCCTGTGGAAGGA
GGAGAAATTATGAAAAAACTAATAACTTTATGTCCTCTTGATGTATTAGAAAATTTCCAA
GCATGGTATCATCTCAGTTTTCTAATTTGCAGGTTGGAACAGGTGACAGTCCCCTGCTGG
GACAGAGAATTGGGTTCTGATAGACTCTGTGCCACACTAAAAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-315, - strand, RNAz p=0.516893
               

               
               332-462, - strand, RNAz p=0.83843

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-315, - strand, RNAz p=0.516893
               

               
               332-462, - strand, RNAz p=0.83843

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-462, gnl|bosTau2|chrX (22299586-22300042)
               

               
               1-462, gnl|canFam2|chrX (58688730-58689006)
               

               
               1-462, gnl|echTel1|scaffold_321661 (46498-46773)
               

               
               1-462, gnl|hg17|chrX (70466940-70467217)
               

               
               1-462, gnl|Hg17|chrX (70466946-70467695)
               

               
               1-462, gnl|mm7|chrX (96926903-96927116)
               

               
               1-462, gnl|monDom2|scaffold_188 (132618-132833)
               

               
               1-462, gnl|rheMac2|chrX (70364506-70364779)
               

               
               1-462, gnl|rn3|chrX (89738459-89738669)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-462, gnl|bosTau2|chrX (22299586-22300042)
               

               
               1-462, gnl|canFam2|chrX (58688730-58689006)
               

               
               1-462, gnl|echTel1|scaffold_321661 (46498-46773)
               

               
               1-462, gnl|hg17|chrX (70466940-70467217)
               

               
               1-462, gnl|Hg17|chrX (70466946-70467695)
               

               
               1-462, gnl|mm7|chrX (96926903-96927116)
               

               
               1-462, gnl|monDom2|scaffold_188 (132618-132833)
               

               
               1-462, gnl|rheMac2|chrX (70364506-70364779)
               

               
               1-462, gnl|rn3|chrX (89738459-89738669)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	198-315, - strand, RNAz p=0.516893
	332-462, - strand, RNAz p=0.83843

	1-462, gnl\|bosTau2\|chrX (22299586-22300042)
	1-462, gnl\|canFam2\|chrX (58688730-58689006)
	1-462, gnl\|echTel1\|scaffold_321661 (46498-46773)
	1-462, gnl\|hg17\|chrX (70466940-70467217)
	1-462, gnl\|Hg17\|chrX (70466946-70467695)
	1-462, gnl\|mm7\|chrX (96926903-96927116)
	1-462, gnl\|monDom2\|scaffold_188 (132618-132833)
	1-462, gnl\|rheMac2\|chrX (70364506-70364779)
	1-462, gnl\|rn3\|chrX (89738459-89738669)