Non-Coding RNA Search

rplac_13125.y1

Sequence:


               
               TGACCATCTTCATCAAGTACGTGCTGCACTCCGTGGACCTGCAGAGCGAGAACCCCTGGG
ACAACAAGGCTGTGTACATGCTCTACACGGAGCTGTTCACAGGCTTCATCAAGGTTCTGC
TGTACATGGCTTTCATGACCATCATGATCAAGGTGCACACTTTCCCCCTCTTTGCCATCC
GGCCTATGTACCTGGCCATGAGGCAGTTCAAGAAAGCTGTGACCGACGCCATCATGTCTC
GCCGAGCCATCCGTAACATGAACACACTGTATCCAGATGCCACCGCAGAGGAACTCCAGG
CCATGGACAATGTCTGCATCATTTGCAGAGAAGAGATGGTGACGGGTGCCAAGAGACTGC
CCTGCAACCACATTTTCCACACCAGCTGCCTGCGCTCTTGGTTCCAGCGGCAGCAGACCT
GCCCTACCTGCCGCATGGACGTCCTTCGGGCATCACTGCCGAACCAGTCACCACCACCCC
CTGAACCTGCGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCATCTTCATCAAGTACGTGCTGCACTCCGTGGACCTGCAGAGCGAGAACCCCTGGG
ACAACAAGGCTGTGTACATGCTCTACACGGAGCTGTTCACAGGCTTCATCAAGGTTCTGC
TGTACATGGCTTTCATGACCATCATGATCAAGGTGCACACTTTCCCCCTCTTTGCCATCC
GGCCTATGTACCTGGCCATGAGGCAGTTCAAGAAAGCTGTGACCGACGCCATCATGTCTC
GCCGAGCCATCCGTAACATGAACACACTGTATCCAGATGCCACCGCAGAGGAACTCCAGG
CCATGGACAATGTCTGCATCATTTGCAGAGAAGAGATGGTGACGGGTGCCAAGAGACTGC
CCTGCAACCACATTTTCCACACCAGCTGCCTGCGCTCTTGGTTCCAGCGGCAGCAGACCT
GCCCTACCTGCCGCATGGACGTCCTTCGGGCATCACTGCCGAACCAGTCACCACCACCCC
CTGAACCTGCGGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47211175|emb|CAF91161.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47211175|emb|CAF91161.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-203, + strand, RNAz p=0.94595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-203, + strand, RNAz p=0.94595

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               100-203, gnl|bosTau2|chr29 (34253380-34253277)
               

               
               100-203, gnl|canFam2|chr18 (55089858-55089727)
               

               
               100-203, gnl|danRer3|chr14 (26062801-26062933)
               

               
               100-203, gnl|dasNov1|scaffold_34329 (10007-10148)
               

               
               100-203, gnl|fr1|chrUn (108521418-108521289)
               

               
               100-203, gnl|hg17|chr11 (64655306-64655444)
               

               
               100-203, gnl|Hg17|chr11 (64655423-64655320)
               

               
               100-203, gnl|loxAfr1|scaffold_6967 (53051-53192)
               

               
               100-203, gnl|mm7|chr19 (5944914-5944778)
               

               
               100-203, gnl|Mm7|chr19 (5944795-5944898)
               

               
               100-203, gnl|monDom2|scaffold_107 (3905299-3905162)
               

               
               100-203, gnl|panTro1|chr9 (65902453-65902591)
               

               
               100-203, gnl|rheMac2|chr14 (9306655-9306517)
               

               
               100-203, gnl|rn3|chr1 (208841037-208840901)
               

               
               100-203, gnl|tetNig1|chrUn_random (35152199-35152338)
               

               
               100-203, gnl|xenTro1|scaffold_251 (1456729-1456916)
               


               
               269-388, gnl|bosTau2|chr29 (34253044-34252925)
               

               
               269-388, gnl|Hg17|chr11 (64655083-64654964)
               

               
               269-388, gnl|Mm7|chr19 (5945131-5945250)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-203, gnl|bosTau2|chr29 (34253380-34253277)
               

               
               100-203, gnl|canFam2|chr18 (55089858-55089727)
               

               
               100-203, gnl|danRer3|chr14 (26062801-26062933)
               

               
               100-203, gnl|dasNov1|scaffold_34329 (10007-10148)
               

               
               100-203, gnl|fr1|chrUn (108521418-108521289)
               

               
               100-203, gnl|hg17|chr11 (64655306-64655444)
               

               
               100-203, gnl|Hg17|chr11 (64655423-64655320)
               

               
               100-203, gnl|loxAfr1|scaffold_6967 (53051-53192)
               

               
               100-203, gnl|mm7|chr19 (5944914-5944778)
               

               
               100-203, gnl|Mm7|chr19 (5944795-5944898)
               

               
               100-203, gnl|monDom2|scaffold_107 (3905299-3905162)
               

               
               100-203, gnl|panTro1|chr9 (65902453-65902591)
               

               
               100-203, gnl|rheMac2|chr14 (9306655-9306517)
               

               
               100-203, gnl|rn3|chr1 (208841037-208840901)
               

               
               100-203, gnl|tetNig1|chrUn_random (35152199-35152338)
               

               
               100-203, gnl|xenTro1|scaffold_251 (1456729-1456916)
               


               
               269-388, gnl|bosTau2|chr29 (34253044-34252925)
               

               
               269-388, gnl|Hg17|chr11 (64655083-64654964)
               

               
               269-388, gnl|Mm7|chr19 (5945131-5945250)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	100-203, gnl\|bosTau2\|chr29 (34253380-34253277)
	100-203, gnl\|canFam2\|chr18 (55089858-55089727)
	100-203, gnl\|danRer3\|chr14 (26062801-26062933)
	100-203, gnl\|dasNov1\|scaffold_34329 (10007-10148)
	100-203, gnl\|fr1\|chrUn (108521418-108521289)
	100-203, gnl\|hg17\|chr11 (64655306-64655444)
	100-203, gnl\|Hg17\|chr11 (64655423-64655320)
	100-203, gnl\|loxAfr1\|scaffold_6967 (53051-53192)
	100-203, gnl\|mm7\|chr19 (5944914-5944778)
	100-203, gnl\|Mm7\|chr19 (5944795-5944898)
	100-203, gnl\|monDom2\|scaffold_107 (3905299-3905162)
	100-203, gnl\|panTro1\|chr9 (65902453-65902591)
	100-203, gnl\|rheMac2\|chr14 (9306655-9306517)
	100-203, gnl\|rn3\|chr1 (208841037-208840901)
	100-203, gnl\|tetNig1\|chrUn_random (35152199-35152338)
	100-203, gnl\|xenTro1\|scaffold_251 (1456729-1456916)

	269-388, gnl\|bosTau2\|chr29 (34253044-34252925)
	269-388, gnl\|Hg17\|chr11 (64655083-64654964)
	269-388, gnl\|Mm7\|chr19 (5945131-5945250)