Non-Coding RNA Search

rplac_13403.y1

Sequence:


               
               TAGGGTCATGAAGAAGAGGCGGCGGCGGGAGATCCGAGGCGGCGGCGGGAGCGTGAAACT
GCGGTAGCTGTCTGTTCGGCTGGTAGTGTGGCTCTGTGGCAAGAGCGTAGTTCTTAAACT
CCTCTCTGGGCAGCAGCCGGGGCTCGGGGCTGAGAGCGGCCGTGGGGCCGCCTCCCCGGG
CCCCCTGGCTCCGCCATGTTCCGCAGGGCACGCCTTAGCGTGAAGCCGAATGTCAGGCCT
GGAGCGGGCGCCAGGGGCTCCACTGCCCCCAATCCCCAGCGTGAACAAGAGGCTCCCAGG
CCGCCAGAGCCTGCCGCGGCCTCTGTCCCGAAGCCAGCGGAACCTACAGATGTGCCTCCG
GTGGATTCTGGGGAGGCAGAACCTCAAGAAAAGACTCCCAAGAGCAGTGATGAAAAGACT
GATGGTGGGAATAATGTTGAAGAATCAAGTAAATCTTCCCCTACTGTTTCACAAAGAAGA
AAGCGACTATCAAGTACCTCTAGTGTGGTCAAGCCTAGTGTCAGTGTTCCCTCAGAACCT
CATCCTTTATCTACAGTTAATAATCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGTCATGAAGAAGAGGCGGCGGCGGGAGATCCGAGGCGGCGGCGGGAGCGTGAAACT
GCGGTAGCTGTCTGTTCGGCTGGTAGTGTGGCTCTGTGGCAAGAGCGTAGTTCTTAAACT
CCTCTCTGGGCAGCAGCCGGGGCTCGGGGCTGAGAGCGGCCGTGGGGCCGCCTCCCCGGG
CCCCCTGGCTCCGCCATGTTCCGCAGGGCACGCCTTAGCGTGAAGCCGAATGTCAGGCCT
GGAGCGGGCGCCAGGGGCTCCACTGCCCCCAATCCCCAGCGTGAACAAGAGGCTCCCAGG
CCGCCAGAGCCTGCCGCGGCCTCTGTCCCGAAGCCAGCGGAACCTACAGATGTGCCTCCG
GTGGATTCTGGGGAGGCAGAACCTCAAGAAAAGACTCCCAAGAGCAGTGATGAAAAGACT
GATGGTGGGAATAATGTTGAAGAATCAAGTAAATCTTCCCCTACTGTTTCACAAAGAAGA
AAGCGACTATCAAGTACCTCTAGTGTGGTCAAGCCTAGTGTCAGTGTTCCCTCAGAACCT
CATCCTTTATCTACAGTTAATAATCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PIM7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PIM7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-276, + strand, RNAz p=0.885477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-276, + strand, RNAz p=0.885477

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF298152, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF298152, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-407, gnl|bosTau2|chr20 (4683477-4683882)
               

               
               2-407, gnl|Hg17|chr5 (70787264-70787672)
               

               
               2-407, gnl|Mm7|chr13 (97176613-97176214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-407, gnl|bosTau2|chr20 (4683477-4683882)
               

               
               2-407, gnl|Hg17|chr5 (70787264-70787672)
               

               
               2-407, gnl|Mm7|chr13 (97176613-97176214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	2-407, gnl\|bosTau2\|chr20 (4683477-4683882)
	2-407, gnl\|Hg17\|chr5 (70787264-70787672)
	2-407, gnl\|Mm7\|chr13 (97176613-97176214)