Non-Coding RNA Search

rplac_14873.y1

Sequence:


               
               ATGGAAGTGAAAGACTATTGAGCCAGTCACCCTCCAGACTGGGCAAGCCACAGCCTCCGC
CTCACCCCCACGCCAAATGGCAAAGGGCTGGGTCTCCCCATAAACCAGCTGGGAAGCCTG
GCAGCCAGCCCGAGGGGCTAGGCGCTAATGGCAGTTTCCAGTACATGAAAGGGCCTAAGC
CGTGACTGTGAGTCACCGCTGTCAACCCAGCACCCCATCAGGATTTTACAAGGGCTCTGA
GGCCCCAGGGAAGGGGGTGCTCGCATTGGCAGAGCTTTGGCCGGGAACAGACGTTTTAGA
CAGCATCCCTGTGGACGCCGGCCAAAGCCCTTTGAAATGCTGTCACCAATTTACAGAGGA
GGAAACCGAGGCTCCGAGAGGGGACGTGACTCACCGAGGTCAAGAATGTAGTGAGTCACA
TCGCGGCATGTCTGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAGTGAAAGACTATTGAGCCAGTCACCCTCCAGACTGGGCAAGCCACAGCCTCCGC
CTCACCCCCACGCCAAATGGCAAAGGGCTGGGTCTCCCCATAAACCAGCTGGGAAGCCTG
GCAGCCAGCCCGAGGGGCTAGGCGCTAATGGCAGTTTCCAGTACATGAAAGGGCCTAAGC
CGTGACTGTGAGTCACCGCTGTCAACCCAGCACCCCATCAGGATTTTACAAGGGCTCTGA
GGCCCCAGGGAAGGGGGTGCTCGCATTGGCAGAGCTTTGGCCGGGAACAGACGTTTTAGA
CAGCATCCCTGTGGACGCCGGCCAAAGCCCTTTGAAATGCTGTCACCAATTTACAGAGGA
GGAAACCGAGGCTCCGAGAGGGGACGTGACTCACCGAGGTCAAGAATGTAGTGAGTCACA
TCGCGGCATGTCTGGCAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-159, - strand, RNAz p=0.917865
               

               
               77-181, - strand, RNAz p=0.843972

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-159, - strand, RNAz p=0.917865
               

               
               77-181, - strand, RNAz p=0.843972

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-313, gnl|bosTau2|chr5 (67199162-67198843)
               

               
               2-313, gnl|canFam2|chr10 (29924423-29923805)
               

               
               2-313, gnl|echTel1|scaffold_172960 (1044-1599)
               

               
               2-313, gnl|hg17|chr22 (36502700-36503308)
               

               
               2-313, gnl|Hg17|chr22 (36502900-36503202)
               

               
               2-313, gnl|loxAfr1|scaffold_61063 (4389-3742)
               

               
               2-313, gnl|mm7|chr15 (79096128-79096736)
               

               
               2-313, gnl|oryCun1|scaffold_50097 (2021-1475)
               

               
               2-313, gnl|panTro1|chr23 (36681737-36682345)
               

               
               2-313, gnl|rheMac2|chr10 (81700026-81700635)
               

               
               2-313, gnl|rn3|chr7 (117011625-117012236)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-313, gnl|bosTau2|chr5 (67199162-67198843)
               

               
               2-313, gnl|canFam2|chr10 (29924423-29923805)
               

               
               2-313, gnl|echTel1|scaffold_172960 (1044-1599)
               

               
               2-313, gnl|hg17|chr22 (36502700-36503308)
               

               
               2-313, gnl|Hg17|chr22 (36502900-36503202)
               

               
               2-313, gnl|loxAfr1|scaffold_61063 (4389-3742)
               

               
               2-313, gnl|mm7|chr15 (79096128-79096736)
               

               
               2-313, gnl|oryCun1|scaffold_50097 (2021-1475)
               

               
               2-313, gnl|panTro1|chr23 (36681737-36682345)
               

               
               2-313, gnl|rheMac2|chr10 (81700026-81700635)
               

               
               2-313, gnl|rn3|chr7 (117011625-117012236)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	2-159, - strand, RNAz p=0.917865
	77-181, - strand, RNAz p=0.843972

	2-313, gnl\|bosTau2\|chr5 (67199162-67198843)
	2-313, gnl\|canFam2\|chr10 (29924423-29923805)
	2-313, gnl\|echTel1\|scaffold_172960 (1044-1599)
	2-313, gnl\|hg17\|chr22 (36502700-36503308)
	2-313, gnl\|Hg17\|chr22 (36502900-36503202)
	2-313, gnl\|loxAfr1\|scaffold_61063 (4389-3742)
	2-313, gnl\|mm7\|chr15 (79096128-79096736)
	2-313, gnl\|oryCun1\|scaffold_50097 (2021-1475)
	2-313, gnl\|panTro1\|chr23 (36681737-36682345)
	2-313, gnl\|rheMac2\|chr10 (81700026-81700635)
	2-313, gnl\|rn3\|chr7 (117011625-117012236)