Non-Coding RNA Search

rplac_15016.y1

Sequence:


               
               CCAAGTGTGGTGTCAAATGCAGGGCCAGAACCTTAAGTTTTCCTCTATTAAATGCACACA
CAGAAACTTGATAAGAAGAATGCCCCATGTCTACAAAAACTACATTTCTTGGCTTCTCTT
CTAAGGCAGGAAGATCTTGCTTATAGATTCCATATGCAAGAGCAACTGCAGTAGTTTCAT
TCATTAATCGCAGGCAATTGAGACCTGCAATCTGTGTTGCATCCATCACTGATCTTCTTT
CTGCATCAGTATAGAAACAAGGAACCGAAACAACACAGTCCACAACAGGCTTCTTAAGAA
CACTTTCTGCCGTCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGTGTGGTGTCAAATGCAGGGCCAGAACCTTAAGTTTTCCTCTATTAAATGCACACA
CAGAAACTTGATAAGAAGAATGCCCCATGTCTACAAAAACTACATTTCTTGGCTTCTCTT
CTAAGGCAGGAAGATCTTGCTTATAGATTCCATATGCAAGAGCAACTGCAGTAGTTTCAT
TCATTAATCGCAGGCAATTGAGACCTGCAATCTGTGTTGCATCCATCACTGATCTTCTTT
CTGCATCAGTATAGAAACAAGGAACCGAAACAACACAGTCCACAACAGGCTTCTTAAGAA
CACTTTCTGCCGTCTCCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               30-127, + strand, RNAz p=0.745164

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-127, + strand, RNAz p=0.745164

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               30-170, gnl|bosTau2|chr7 (30355727-30355867)
               

               
               30-170, gnl|canFam2|chr11 (24342311-24342484)
               

               
               30-170, gnl|danRer3|chr21 (39727673-39727843)
               

               
               30-170, gnl|dasNov1|scaffold_41205 (7061-7234)
               

               
               30-170, gnl|echTel1|scaffold_133020 (1268-1448)
               

               
               30-170, gnl|fr1|chrUn (207334140-207334328)
               

               
               30-170, gnl|galGal2|chr13 (16179086-16179265)
               

               
               30-170, gnl|hg17|chr5 (132437558-132437736)
               

               
               30-170, gnl|Hg17|chr5 (132437719-132437579)
               

               
               30-170, gnl|loxAfr1|scaffold_186687 (1297-1123)
               

               
               30-170, gnl|mm7|chr11 (53240443-53240276)
               

               
               30-170, gnl|Mm7|chr11 (53240284-53240424)
               

               
               30-170, gnl|monDom2|scaffold_6 (92130964-92130788)
               

               
               30-170, gnl|oryCun1|scaffold_169214 (49710-49546)
               

               
               30-170, gnl|panTro1|chr4 (138772533-138772711)
               

               
               30-170, gnl|rheMac2|chr6 (129474242-129474419)
               

               
               30-170, gnl|rn3|chr10 (38737354-38737186)
               

               
               30-170, gnl|tetNig1|chr1 (1229525-1229673)
               

               
               30-170, gnl|xenTro1|scaffold_473 (944029-944198)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-170, gnl|bosTau2|chr7 (30355727-30355867)
               

               
               30-170, gnl|canFam2|chr11 (24342311-24342484)
               

               
               30-170, gnl|danRer3|chr21 (39727673-39727843)
               

               
               30-170, gnl|dasNov1|scaffold_41205 (7061-7234)
               

               
               30-170, gnl|echTel1|scaffold_133020 (1268-1448)
               

               
               30-170, gnl|fr1|chrUn (207334140-207334328)
               

               
               30-170, gnl|galGal2|chr13 (16179086-16179265)
               

               
               30-170, gnl|hg17|chr5 (132437558-132437736)
               

               
               30-170, gnl|Hg17|chr5 (132437719-132437579)
               

               
               30-170, gnl|loxAfr1|scaffold_186687 (1297-1123)
               

               
               30-170, gnl|mm7|chr11 (53240443-53240276)
               

               
               30-170, gnl|Mm7|chr11 (53240284-53240424)
               

               
               30-170, gnl|monDom2|scaffold_6 (92130964-92130788)
               

               
               30-170, gnl|oryCun1|scaffold_169214 (49710-49546)
               

               
               30-170, gnl|panTro1|chr4 (138772533-138772711)
               

               
               30-170, gnl|rheMac2|chr6 (129474242-129474419)
               

               
               30-170, gnl|rn3|chr10 (38737354-38737186)
               

               
               30-170, gnl|tetNig1|chr1 (1229525-1229673)
               

               
               30-170, gnl|xenTro1|scaffold_473 (944029-944198)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	30-170, gnl\|bosTau2\|chr7 (30355727-30355867)
	30-170, gnl\|canFam2\|chr11 (24342311-24342484)
	30-170, gnl\|danRer3\|chr21 (39727673-39727843)
	30-170, gnl\|dasNov1\|scaffold_41205 (7061-7234)
	30-170, gnl\|echTel1\|scaffold_133020 (1268-1448)
	30-170, gnl\|fr1\|chrUn (207334140-207334328)
	30-170, gnl\|galGal2\|chr13 (16179086-16179265)
	30-170, gnl\|hg17\|chr5 (132437558-132437736)
	30-170, gnl\|Hg17\|chr5 (132437719-132437579)
	30-170, gnl\|loxAfr1\|scaffold_186687 (1297-1123)
	30-170, gnl\|mm7\|chr11 (53240443-53240276)
	30-170, gnl\|Mm7\|chr11 (53240284-53240424)
	30-170, gnl\|monDom2\|scaffold_6 (92130964-92130788)
	30-170, gnl\|oryCun1\|scaffold_169214 (49710-49546)
	30-170, gnl\|panTro1\|chr4 (138772533-138772711)
	30-170, gnl\|rheMac2\|chr6 (129474242-129474419)
	30-170, gnl\|rn3\|chr10 (38737354-38737186)
	30-170, gnl\|tetNig1\|chr1 (1229525-1229673)
	30-170, gnl\|xenTro1\|scaffold_473 (944029-944198)