Non-Coding RNA Search

rplac_15172.y1

Sequence:


               
               TGAGAGGAGACAGGCCGCAGCAGGATGTGGACCTTCCTGGATACAGAGAAAAATATTCTC
CCTTACGGATGCTTTGGCTGCTCAAGTTCAGAAACATTTATGGAAATAGATACAGTTGAA
CAGTCCCTAGTTGCTGTGCTTAATTCAGCAGGCGGTCAGAATACCTCTGTCAGGAACATC
AGTGCATCTGATCTCACCGTAGATAATCCCTTAATGGAAGTAGAAACATTGAAATGTAAT
CCTTCCTCTGAATTTTTGAGTAATCCCACTTCCACTCAGAATTTACAGCTTCCAGAAAGT
AGTGTTGAAATGTCTGGAACAAATAAAGAATATGGGAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAGGAGACAGGCCGCAGCAGGATGTGGACCTTCCTGGATACAGAGAAAAATATTCTC
CCTTACGGATGCTTTGGCTGCTCAAGTTCAGAAACATTTATGGAAATAGATACAGTTGAA
CAGTCCCTAGTTGCTGTGCTTAATTCAGCAGGCGGTCAGAATACCTCTGTCAGGAACATC
AGTGCATCTGATCTCACCGTAGATAATCCCTTAATGGAAGTAGAAACATTGAAATGTAAT
CCTTCCTCTGAATTTTTGAGTAATCCCACTTCCACTCAGAATTTACAGCTTCCAGAAAGT
AGTGTTGAAATGTCTGGAACAAATAAAGAATATGGGAATCAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-341, gnl|bosTau2|chr16 (38911910-38912246)
               

               
               1-341, gnl|canFam2|chr2 (84822871-84821762)
               

               
               1-341, gnl|dasNov1|scaffold_9446 (2429-1314)
               

               
               1-341, gnl|echTel1|scaffold_204356 (6833-5717)
               

               
               1-341, gnl|galGal2|chrUn (86322714-86321582)
               

               
               1-341, gnl|hg17|chr1 (15731581-15732697)
               

               
               1-341, gnl|Hg17|chr1 (15732316-15732655)
               

               
               1-341, gnl|loxAfr1|scaffold_15285 (6023-4911)
               

               
               1-341, gnl|mm7|chr4 (141064119-141063060)
               

               
               1-341, gnl|Mm7|chr4 (141063433-141063097)
               

               
               1-341, gnl|monDom2|scaffold_109 (3604376-3603261)
               

               
               1-341, gnl|oryCun1|scaffold_145194 (22051-23114)
               

               
               1-341, gnl|panTro1|chr1 (15888592-15889711)
               

               
               1-341, gnl|rheMac2|chr1 (18442589-18443705)
               

               
               1-341, gnl|rn3|chr5 (160594650-160593601)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-341, gnl|bosTau2|chr16 (38911910-38912246)
               

               
               1-341, gnl|canFam2|chr2 (84822871-84821762)
               

               
               1-341, gnl|dasNov1|scaffold_9446 (2429-1314)
               

               
               1-341, gnl|echTel1|scaffold_204356 (6833-5717)
               

               
               1-341, gnl|galGal2|chrUn (86322714-86321582)
               

               
               1-341, gnl|hg17|chr1 (15731581-15732697)
               

               
               1-341, gnl|Hg17|chr1 (15732316-15732655)
               

               
               1-341, gnl|loxAfr1|scaffold_15285 (6023-4911)
               

               
               1-341, gnl|mm7|chr4 (141064119-141063060)
               

               
               1-341, gnl|Mm7|chr4 (141063433-141063097)
               

               
               1-341, gnl|monDom2|scaffold_109 (3604376-3603261)
               

               
               1-341, gnl|oryCun1|scaffold_145194 (22051-23114)
               

               
               1-341, gnl|panTro1|chr1 (15888592-15889711)
               

               
               1-341, gnl|rheMac2|chr1 (18442589-18443705)
               

               
               1-341, gnl|rn3|chr5 (160594650-160593601)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-341, gnl\|bosTau2\|chr16 (38911910-38912246)
	1-341, gnl\|canFam2\|chr2 (84822871-84821762)
	1-341, gnl\|dasNov1\|scaffold_9446 (2429-1314)
	1-341, gnl\|echTel1\|scaffold_204356 (6833-5717)
	1-341, gnl\|galGal2\|chrUn (86322714-86321582)
	1-341, gnl\|hg17\|chr1 (15731581-15732697)
	1-341, gnl\|Hg17\|chr1 (15732316-15732655)
	1-341, gnl\|loxAfr1\|scaffold_15285 (6023-4911)
	1-341, gnl\|mm7\|chr4 (141064119-141063060)
	1-341, gnl\|Mm7\|chr4 (141063433-141063097)
	1-341, gnl\|monDom2\|scaffold_109 (3604376-3603261)
	1-341, gnl\|oryCun1\|scaffold_145194 (22051-23114)
	1-341, gnl\|panTro1\|chr1 (15888592-15889711)
	1-341, gnl\|rheMac2\|chr1 (18442589-18443705)
	1-341, gnl\|rn3\|chr5 (160594650-160593601)