Non-Coding RNA Search

rplac_15309.y1

Sequence:


               
               CGTCTACACCGTGTTCTACTCGCTGCTCTTCGTGTTCATCTACGTGCAGCTCTGGCTGGT
TTTGCGCTACCGCCACAATCGGCTCAGCTACCAGAGTGTCTTCCTCTTTCTCTGCCTCTT
CTGGGCCTCTCTGAGGACGGTCCTCTTCTCCTTCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTACACCGTGTTCTACTCGCTGCTCTTCGTGTTCATCTACGTGCAGCTCTGGCTGGT
TTTGCGCTACCGCCACAATCGGCTCAGCTACCAGAGTGTCTTCCTCTTTCTCTGCCTCTT
CTGGGCCTCTCTGAGGACGGTCCTCTTCTCCTTCTACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29611495|gb|AAO85078.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29611495|gb|AAO85078.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-159, gnl|bosTau2|chr28 (4298826-4298984)
               

               
               1-159, gnl|canFam2|chr4 (6862157-6861899)
               

               
               1-159, gnl|danRer3|chr11 (42737650-42737908)
               

               
               1-159, gnl|dasNov1|scaffold_195518 (4666-4924)
               

               
               1-159, gnl|fr1|chrUn (318162444-318162186)
               

               
               1-159, gnl|galGal2|chr3 (34096796-34096538)
               

               
               1-159, gnl|hg17|chr1 (232632048-232632306)
               

               
               1-159, gnl|Hg17|chr1 (232632104-232632262)
               

               
               1-159, gnl|loxAfr1|scaffold_50446 (4578-4332)
               

               
               1-159, gnl|mm7|chr13 (12736186-12735928)
               

               
               1-159, gnl|Mm7|chr13 (12736128-12735970)
               

               
               1-159, gnl|monDom2|scaffold_13 (49301957-49301699)
               

               
               1-159, gnl|oryCun1|scaffold_175262 (38014-38272)
               

               
               1-159, gnl|panTro1|chr1 (216462981-216463239)
               

               
               1-159, gnl|rheMac2|chr14 (10140588-10140342)
               

               
               1-159, gnl|rn3|chr17 (66984622-66984880)
               

               
               1-159, gnl|tetNig1|chr17 (1905205-1904947)
               

               
               1-159, gnl|xenTro1|scaffold_371 (140309-140567)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr28 (4298826-4298984)
               

               
               1-159, gnl|canFam2|chr4 (6862157-6861899)
               

               
               1-159, gnl|danRer3|chr11 (42737650-42737908)
               

               
               1-159, gnl|dasNov1|scaffold_195518 (4666-4924)
               

               
               1-159, gnl|fr1|chrUn (318162444-318162186)
               

               
               1-159, gnl|galGal2|chr3 (34096796-34096538)
               

               
               1-159, gnl|hg17|chr1 (232632048-232632306)
               

               
               1-159, gnl|Hg17|chr1 (232632104-232632262)
               

               
               1-159, gnl|loxAfr1|scaffold_50446 (4578-4332)
               

               
               1-159, gnl|mm7|chr13 (12736186-12735928)
               

               
               1-159, gnl|Mm7|chr13 (12736128-12735970)
               

               
               1-159, gnl|monDom2|scaffold_13 (49301957-49301699)
               

               
               1-159, gnl|oryCun1|scaffold_175262 (38014-38272)
               

               
               1-159, gnl|panTro1|chr1 (216462981-216463239)
               

               
               1-159, gnl|rheMac2|chr14 (10140588-10140342)
               

               
               1-159, gnl|rn3|chr17 (66984622-66984880)
               

               
               1-159, gnl|tetNig1|chr17 (1905205-1904947)
               

               
               1-159, gnl|xenTro1|scaffold_371 (140309-140567)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-159, gnl\|bosTau2\|chr28 (4298826-4298984)
	1-159, gnl\|canFam2\|chr4 (6862157-6861899)
	1-159, gnl\|danRer3\|chr11 (42737650-42737908)
	1-159, gnl\|dasNov1\|scaffold_195518 (4666-4924)
	1-159, gnl\|fr1\|chrUn (318162444-318162186)
	1-159, gnl\|galGal2\|chr3 (34096796-34096538)
	1-159, gnl\|hg17\|chr1 (232632048-232632306)
	1-159, gnl\|Hg17\|chr1 (232632104-232632262)
	1-159, gnl\|loxAfr1\|scaffold_50446 (4578-4332)
	1-159, gnl\|mm7\|chr13 (12736186-12735928)
	1-159, gnl\|Mm7\|chr13 (12736128-12735970)
	1-159, gnl\|monDom2\|scaffold_13 (49301957-49301699)
	1-159, gnl\|oryCun1\|scaffold_175262 (38014-38272)
	1-159, gnl\|panTro1\|chr1 (216462981-216463239)
	1-159, gnl\|rheMac2\|chr14 (10140588-10140342)
	1-159, gnl\|rn3\|chr17 (66984622-66984880)
	1-159, gnl\|tetNig1\|chr17 (1905205-1904947)
	1-159, gnl\|xenTro1\|scaffold_371 (140309-140567)