Non-Coding RNA Search

rplac_15616.y1

Sequence:


               
               GAGGGTTTTTTTTTTTTTTTTTTTCCCCCTCTCTCTCTCCTTTCCGAGCAGCCAAAGGGA
GGGGAGGAAATGCAGCGCAAAAAACTAGTGTCCCGATTGGTAGTTTCCTCCCTCCGCCAG
GCTCCTCCCTCTCTTCCTCGGAAAAGGCTCTCCCCCAAGTCAGGAAAGCCACCGCCGGAT
CAGCTTTGGCGGTGTGAGTCTATTGGGAGAGGGGAAAATATATAGATATATCTCCTCCTC
TGAGAGTAGAACACACTCTCTGGAGATTTCTCTACGCCAAGCCAGTAGCCGCTGCTACCA
TCCCATTCTCTCCCCGCGAGCAAGGACTTCTCTCGATGCAGTTTAATTCCAGTTGGCTTT
TCTTCCCAGGCGAAAGGAAATCAACAGGCAACTCAGGGTTGGATGTGCAGATTTGAAGGG
GGAGGGGGAGGAGGAATAAAAAGGAAGGGGGAGCCACCCTCCCAGTCCTCGCACACACAC
TCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTTTTTTTTTTTTTTTTTTTCCCCCTCTCTCTCTCCTTTCCGAGCAGCCAAAGGGA
GGGGAGGAAATGCAGCGCAAAAAACTAGTGTCCCGATTGGTAGTTTCCTCCCTCCGCCAG
GCTCCTCCCTCTCTTCCTCGGAAAAGGCTCTCCCCCAAGTCAGGAAAGCCACCGCCGGAT
CAGCTTTGGCGGTGTGAGTCTATTGGGAGAGGGGAAAATATATAGATATATCTCCTCCTC
TGAGAGTAGAACACACTCTCTGGAGATTTCTCTACGCCAAGCCAGTAGCCGCTGCTACCA
TCCCATTCTCTCCCCGCGAGCAAGGACTTCTCTCGATGCAGTTTAATTCCAGTTGGCTTT
TCTTCCCAGGCGAAAGGAAATCAACAGGCAACTCAGGGTTGGATGTGCAGATTTGAAGGG
GGAGGGGGAGGAGGAATAAAAAGGAAGGGGGAGCCACCCTCCCAGTCCTCGCACACACAC
TCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-205, - strand, RNAz p=0.868405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-205, - strand, RNAz p=0.868405

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               93-196, - strand, RNAmicro p=0.999546
               

               
               45-126, + strand, RNAmicro p=0.997551

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               93-196, - strand, RNAmicro p=0.999546
               

               
               45-126, + strand, RNAmicro p=0.997551

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-483, gnl|bosTau2|chr12 (774086-773617)
               

               
               7-483, gnl|Hg17|chr13 (57103930-57103471)
               

               
               7-483, gnl|Mm7|chr14 (79121695-79121186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-483, gnl|bosTau2|chr12 (774086-773617)
               

               
               7-483, gnl|Hg17|chr13 (57103930-57103471)
               

               
               7-483, gnl|Mm7|chr14 (79121695-79121186)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	93-196, - strand, RNAmicro p=0.999546
	45-126, + strand, RNAmicro p=0.997551

	7-483, gnl\|bosTau2\|chr12 (774086-773617)
	7-483, gnl\|Hg17\|chr13 (57103930-57103471)
	7-483, gnl\|Mm7\|chr14 (79121695-79121186)