rplac_1586.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGGCTGCAGAGAGCCCAGTCCCCTCAGCCGAGGAGGCTGGAGCCCTGCCCGGATGCG CTGGAATGGCCGATATGGAACACGGCAGCACCGTGCAGGGTCAAAGACAGCCGGCCCCCC ATGTCAGTGGTCTAGGATGGCCAGTGAAGCCACCAACATCCCAAGTCCTGTGGTGCGCCA GATTGACAAGCAGTTTCTGATTTGCAGTATATGCCTGGAAAGATACAAGAATCCCAAGGT TCTCCCCTGTCTGCACACTTTCTGCGAGAGGTGCCTACAGAACTACATCCCCGCCTACAG CTTAACCCTCTCCTGTCCGGTGTGCCGCCAGACCTCCATCCTGCCCGAGAAGGGGGTGGC CGCGCTCCAGAACAACTTCTTCATCACGAACCTGATGGATGTGCTTCAGCGAACTCCTGG CAGCAACGCCGAGGAGTCCTCTATTCTGGAGACAGTCACCGCTGTGGCTGCAGGAAAGCC TCTGTCTTGCCCAAACCACGATGGGAATGTAAGTGAGCGGGTCGCAGGCTTTGCCTGGCT GCATGGCTGCCTGATTTGGGGAGGCTTTGGGCAATCGGAGGTTATCCACTAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGGCTGCAGAGAGCCCAGTCCCCTCAGCCGAGGAGGCTGGAGCCCTGCCCGGATGCG CTGGAATGGCCGATATGGAACACGGCAGCACCGTGCAGGGTCAAAGACAGCCGGCCCCCC ATGTCAGTGGTCTAGGATGGCCAGTGAAGCCACCAACATCCCAAGTCCTGTGGTGCGCCA GATTGACAAGCAGTTTCTGATTTGCAGTATATGCCTGGAAAGATACAAGAATCCCAAGGT TCTCCCCTGTCTGCACACTTTCTGCGAGAGGTGCCTACAGAACTACATCCCCGCCTACAG CTTAACCCTCTCCTGTCCGGTGTGCCGCCAGACCTCCATCCTGCCCGAGAAGGGGGTGGC CGCGCTCCAGAACAACTTCTTCATCACGAACCTGATGGATGTGCTTCAGCGAACTCCTGG CAGCAACGCCGAGGAGTCCTCTATTCTGGAGACAGTCACCGCTGTGGCTGCAGGAAAGCC TCTGTCTTGCCCAAACCACGATGGGAATGTAAGTGAGCGGGTCGCAGGCTTTGCCTGGCT GCATGGCTGCCTGATTTGGGGAGGCTTTGGGCAATCGGAGGTTATCCACTAACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 345-450, + strand, RNAz p=0.717728 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-450, + strand, RNAz p=0.717728 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 266-590, gnl|bosTau2|chr17 (3336811-3336489) | |
| 266-590, gnl|canFam2|chr15 (54109373-54109621) | |
| 266-590, gnl|danRer3|chr1 (24228966-24228723) | |
| 266-590, gnl|dasNov1|scaffold_6768 (25662-25414) | |
| 266-590, gnl|echTel1|scaffold_194444 (1207-1448) | |
| 266-590, gnl|fr1|chrUn (13559417-13559665) | |
| 266-590, gnl|galGal2|chr4 (20451539-20451787) | |
| 266-590, gnl|hg17|chr4 (154554647-154554895) | |
| 266-590, gnl|Hg17|chr4 (154554643-154554971) | |
| 266-590, gnl|loxAfr1|scaffold_59816 (9459-9219) | |
| 266-590, gnl|mm7|chr3 (84321621-84321373) | |
| 266-590, gnl|Mm7|chr3 (84321622-84321296) | |
| 266-590, gnl|monDom2|scaffold_9 (23492754-23493002) | |
| 266-590, gnl|oryCun1|scaffold_179354 (23778-23530) | |
| 266-590, gnl|panTro1|chr3 (171882308-171882556) | |
| 266-590, gnl|rheMac2|chr5 (145477089-145477337) | |
| 266-590, gnl|rn3|chr2 (175909694-175909446) | |
| 266-590, gnl|tetNig1|chr18 (8109495-8109741) | |
| 266-590, gnl|xenTro1|scaffold_93 (1349145-1348899) | |
| 269-510, gnl|bosTau2|chr15 (28730455-28730220) | |
| 269-510, gnl|canFam2|chr21 (32963331-32963606) | |
| 269-510, gnl|danRer3|chr10 (18257365-18257102) | |
| 269-510, gnl|dasNov1|scaffold_6768 (25416-25661) | |
| 269-510, gnl|echTel1|scaffold_194444 (1468-1191) | |
| 269-510, gnl|fr1|chrUn (13559671-13559409) | |
| 269-510, gnl|galGal2|chr4 (20451804-20451528) | |
| 269-510, gnl|hg17|chr11 (6435847-6436119) | |
| 269-510, gnl|Hg17|chr11 (6436104-6435869) | |
| 269-510, gnl|loxAfr1|scaffold_59816 (9200-9475) | |
| 269-510, gnl|mm7|chr7 (101675780-101676056) | |
| 269-510, gnl|Mm7|chr7 (101676037-101675802) | |
| 269-510, gnl|monDom2|scaffold_43 (18654137-18653867) | |
| 269-510, gnl|oryCun1|scaffold_172930 (56563-56839) | |
| 269-510, gnl|panTro1|chr9 (6578504-6578776) | |
| 269-510, gnl|rheMac2|chr14 (65745618-65745343) | |
| 269-510, gnl|rn3|chr1 (163442153-163442429) | |
| 269-510, gnl|tetNig1|chr16 (4946323-4946583) | |
| 269-510, gnl|xenTro1|scaffold_93 (1348899-1349145) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 266-590, gnl|bosTau2|chr17 (3336811-3336489) | |
| 266-590, gnl|canFam2|chr15 (54109373-54109621) | |
| 266-590, gnl|danRer3|chr1 (24228966-24228723) | |
| 266-590, gnl|dasNov1|scaffold_6768 (25662-25414) | |
| 266-590, gnl|echTel1|scaffold_194444 (1207-1448) | |
| 266-590, gnl|fr1|chrUn (13559417-13559665) | |
| 266-590, gnl|galGal2|chr4 (20451539-20451787) | |
| 266-590, gnl|hg17|chr4 (154554647-154554895) | |
| 266-590, gnl|Hg17|chr4 (154554643-154554971) | |
| 266-590, gnl|loxAfr1|scaffold_59816 (9459-9219) | |
| 266-590, gnl|mm7|chr3 (84321621-84321373) | |
| 266-590, gnl|Mm7|chr3 (84321622-84321296) | |
| 266-590, gnl|monDom2|scaffold_9 (23492754-23493002) | |
| 266-590, gnl|oryCun1|scaffold_179354 (23778-23530) | |
| 266-590, gnl|panTro1|chr3 (171882308-171882556) | |
| 266-590, gnl|rheMac2|chr5 (145477089-145477337) | |
| 266-590, gnl|rn3|chr2 (175909694-175909446) | |
| 266-590, gnl|tetNig1|chr18 (8109495-8109741) | |
| 266-590, gnl|xenTro1|scaffold_93 (1349145-1348899) | |
| 269-510, gnl|bosTau2|chr15 (28730455-28730220) | |
| 269-510, gnl|canFam2|chr21 (32963331-32963606) | |
| 269-510, gnl|danRer3|chr10 (18257365-18257102) | |
| 269-510, gnl|dasNov1|scaffold_6768 (25416-25661) | |
| 269-510, gnl|echTel1|scaffold_194444 (1468-1191) | |
| 269-510, gnl|fr1|chrUn (13559671-13559409) | |
| 269-510, gnl|galGal2|chr4 (20451804-20451528) | |
| 269-510, gnl|hg17|chr11 (6435847-6436119) | |
| 269-510, gnl|Hg17|chr11 (6436104-6435869) | |
| 269-510, gnl|loxAfr1|scaffold_59816 (9200-9475) | |
| 269-510, gnl|mm7|chr7 (101675780-101676056) | |
| 269-510, gnl|Mm7|chr7 (101676037-101675802) | |
| 269-510, gnl|monDom2|scaffold_43 (18654137-18653867) | |
| 269-510, gnl|oryCun1|scaffold_172930 (56563-56839) | |
| 269-510, gnl|panTro1|chr9 (6578504-6578776) | |
| 269-510, gnl|rheMac2|chr14 (65745618-65745343) | |
| 269-510, gnl|rn3|chr1 (163442153-163442429) | |
| 269-510, gnl|tetNig1|chr16 (4946323-4946583) | |
| 269-510, gnl|xenTro1|scaffold_93 (1348899-1349145) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |