Non-Coding RNA Search

rplac_16110.y1

Sequence:


               
               GAGGAGATGGAGGAGCCAGACCCCGGGGAAGAGCCTGTGAAGCCCATCCCTCCGGAGCCC
ATGGACCGGGCTGTGCTAGAGCAGCAGGTGAGGGAGAGGGCAGCCCAGAGCCGGAGGAGG
CCCGGGGAGCCCACGCTGGTCCCAGAGTTGAGCCTGGCGGGGAGCGTGACACCCAACGAC
CAGTGTCCCAGGGTGGAGGTCTTGCGAAGGGAGGACGTCAGGAGGCGCTCGGTGCACTTG
AAGGTGATCTTCAACAACAAGGAAGTGTCCAGGACCGACAGTCGGCCGCTCGGGGCAGAC
TTCCGAGTTCACTTCGGACAGATTTTCAATTTGCAAATATTCAACTGGCCCGAGAGTTTA
ACACTGCAGGTATACGAAACCATTGGACACAGTGGCACCAGCTTGCTAGCAGAAGTGTTT
CTGCCTATTCCTGAAACTACTGTTGTCACTGGAAGGGCTCCTGTTGAAGAAGTGGAGTTT
AGCAGTAACCAGCACGTGACCCTGGACCACGAGGGCGTTGGAAGTGGAGTCCCCTTCTCA
TTTGAAGCTGACGGTAGTAATCAACTGATTCTAATGACCTCGGGGAAAGTGGCCAACAGT
GTGGCATGGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGATGGAGGAGCCAGACCCCGGGGAAGAGCCTGTGAAGCCCATCCCTCCGGAGCCC
ATGGACCGGGCTGTGCTAGAGCAGCAGGTGAGGGAGAGGGCAGCCCAGAGCCGGAGGAGG
CCCGGGGAGCCCACGCTGGTCCCAGAGTTGAGCCTGGCGGGGAGCGTGACACCCAACGAC
CAGTGTCCCAGGGTGGAGGTCTTGCGAAGGGAGGACGTCAGGAGGCGCTCGGTGCACTTG
AAGGTGATCTTCAACAACAAGGAAGTGTCCAGGACCGACAGTCGGCCGCTCGGGGCAGAC
TTCCGAGTTCACTTCGGACAGATTTTCAATTTGCAAATATTCAACTGGCCCGAGAGTTTA
ACACTGCAGGTATACGAAACCATTGGACACAGTGGCACCAGCTTGCTAGCAGAAGTGTTT
CTGCCTATTCCTGAAACTACTGTTGTCACTGGAAGGGCTCCTGTTGAAGAAGTGGAGTTT
AGCAGTAACCAGCACGTGACCCTGGACCACGAGGGCGTTGGAAGTGGAGTCCCCTTCTCA
TTTGAAGCTGACGGTAGTAATCAACTGATTCTAATGACCTCGGGGAAAGTGGCCAACAGT
GTGGCATGGGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62660589|ref|XP_573623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62660589|ref|XP_573623.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-192, - strand, RNAz p=0.581515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-192, - strand, RNAz p=0.581515

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-192, gnl|bosTau2|chr6 (62808228-62808037)
               

               
               1-192, gnl|canFam2|chr3 (67628564-67628337)
               

               
               1-192, gnl|danRer3|chr7 (4561634-4561350)
               

               
               1-192, gnl|dasNov1|scaffold_4432 (17902-18144)
               

               
               1-192, gnl|echTel1|scaffold_281591 (99054-99313)
               

               
               1-192, gnl|fr1|chrUn (37744399-37744181)
               

               
               1-192, gnl|galGal2|chr4 (77030154-77029942)
               

               
               1-192, gnl|hg17|chr4 (15215814-15216057)
               

               
               1-192, gnl|Hg17|chr4 (15215839-15216030)
               

               
               1-192, gnl|loxAfr1|scaffold_37626 (61030-60787)
               

               
               1-192, gnl|mm7|chr5 (43024443-43024689)
               

               
               1-192, gnl|Mm7|chr5 (43024471-43024662)
               

               
               1-192, gnl|monDom2|scaffold_10 (24470868-24470632)
               

               
               1-192, gnl|panTro1|chr3 (15520030-15520273)
               

               
               1-192, gnl|rheMac2|chr5 (10333785-10334028)
               

               
               1-192, gnl|rn3|chr14 (72555112-72554868)
               

               
               1-192, gnl|tetNig1|chr1_random (1683036-1683263)
               


               
               367-527, gnl|bosTau2|chr6 (62794675-62794515)
               

               
               367-527, gnl|Hg17|chr4 (15228713-15228873)
               

               
               367-527, gnl|Mm7|chr5 (43027299-43027459)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-192, gnl|bosTau2|chr6 (62808228-62808037)
               

               
               1-192, gnl|canFam2|chr3 (67628564-67628337)
               

               
               1-192, gnl|danRer3|chr7 (4561634-4561350)
               

               
               1-192, gnl|dasNov1|scaffold_4432 (17902-18144)
               

               
               1-192, gnl|echTel1|scaffold_281591 (99054-99313)
               

               
               1-192, gnl|fr1|chrUn (37744399-37744181)
               

               
               1-192, gnl|galGal2|chr4 (77030154-77029942)
               

               
               1-192, gnl|hg17|chr4 (15215814-15216057)
               

               
               1-192, gnl|Hg17|chr4 (15215839-15216030)
               

               
               1-192, gnl|loxAfr1|scaffold_37626 (61030-60787)
               

               
               1-192, gnl|mm7|chr5 (43024443-43024689)
               

               
               1-192, gnl|Mm7|chr5 (43024471-43024662)
               

               
               1-192, gnl|monDom2|scaffold_10 (24470868-24470632)
               

               
               1-192, gnl|panTro1|chr3 (15520030-15520273)
               

               
               1-192, gnl|rheMac2|chr5 (10333785-10334028)
               

               
               1-192, gnl|rn3|chr14 (72555112-72554868)
               

               
               1-192, gnl|tetNig1|chr1_random (1683036-1683263)
               


               
               367-527, gnl|bosTau2|chr6 (62794675-62794515)
               

               
               367-527, gnl|Hg17|chr4 (15228713-15228873)
               

               
               367-527, gnl|Mm7|chr5 (43027299-43027459)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-192, gnl\|bosTau2\|chr6 (62808228-62808037)
	1-192, gnl\|canFam2\|chr3 (67628564-67628337)
	1-192, gnl\|danRer3\|chr7 (4561634-4561350)
	1-192, gnl\|dasNov1\|scaffold_4432 (17902-18144)
	1-192, gnl\|echTel1\|scaffold_281591 (99054-99313)
	1-192, gnl\|fr1\|chrUn (37744399-37744181)
	1-192, gnl\|galGal2\|chr4 (77030154-77029942)
	1-192, gnl\|hg17\|chr4 (15215814-15216057)
	1-192, gnl\|Hg17\|chr4 (15215839-15216030)
	1-192, gnl\|loxAfr1\|scaffold_37626 (61030-60787)
	1-192, gnl\|mm7\|chr5 (43024443-43024689)
	1-192, gnl\|Mm7\|chr5 (43024471-43024662)
	1-192, gnl\|monDom2\|scaffold_10 (24470868-24470632)
	1-192, gnl\|panTro1\|chr3 (15520030-15520273)
	1-192, gnl\|rheMac2\|chr5 (10333785-10334028)
	1-192, gnl\|rn3\|chr14 (72555112-72554868)
	1-192, gnl\|tetNig1\|chr1_random (1683036-1683263)

	367-527, gnl\|bosTau2\|chr6 (62794675-62794515)
	367-527, gnl\|Hg17\|chr4 (15228713-15228873)
	367-527, gnl\|Mm7\|chr5 (43027299-43027459)