Non-Coding RNA Search

rplac_16474.y1

Sequence:


               
               ACACTTTGATTCAAAAAGAGGAGACTGTCATCTCCCTCCAGGCTTCCTACATGGGAAAGG
AGAACCTAAAGAAAAGGATAGTGGAGATTGAAGTTGTCAAAGAAGAATTTAATGAACATT
TAGAGGTTGTAGACAAGATTAACCAGATCTTCAAAAATTTACAATTTCATCTAAATAAAA
TGAGAACCTTTGAAGAGCCTCCTTTTGAGAAAGAGGCTAATATTATTGTGGATAGATGGC
TTGATATAAATGAAAAGACGGAAGACTACTATGAAAACCTTGGTCGAGCTCTAGCTTTAT
GGGACAAACTTTTTGACTTAAAAAATGGTATTGATGAATGGAGTGAAAAGGTCCTTCAAA
AAATTGAATTACATCAATTGGCTGAAGAGGAAAGAGAAAATCTGAAGGAAGAGTTACTTG
TCCATGAACAAAAATCTTCAGAATTTTCTAAAAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTTTGATTCAAAAAGAGGAGACTGTCATCTCCCTCCAGGCTTCCTACATGGGAAAGG
AGAACCTAAAGAAAAGGATAGTGGAGATTGAAGTTGTCAAAGAAGAATTTAATGAACATT
TAGAGGTTGTAGACAAGATTAACCAGATCTTCAAAAATTTACAATTTCATCTAAATAAAA
TGAGAACCTTTGAAGAGCCTCCTTTTGAGAAAGAGGCTAATATTATTGTGGATAGATGGC
TTGATATAAATGAAAAGACGGAAGACTACTATGAAAACCTTGGTCGAGCTCTAGCTTTAT
GGGACAAACTTTTTGACTTAAAAAATGGTATTGATGAATGGAGTGAAAAGGTCCTTCAAA
AAATTGAATTACATCAATTGGCTGAAGAGGAAAGAGAAAATCTGAAGGAAGAGTTACTTG
TCCATGAACAAAAATCTTCAGAATTTTCTAAAAGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               124-256, - strand, RNAz p=0.890557

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-256, - strand, RNAz p=0.890557

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               85-256, gnl|bosTau2|chr10 (52044927-52044756)
               

               
               85-256, gnl|canFam2|chr8 (41496743-41497036)
               

               
               85-256, gnl|echTel1|scaffold_241568 (3198-2904)
               

               
               85-256, gnl|galGal2|chr5 (49928570-49928278)
               

               
               85-256, gnl|hg17|chr14 (63552919-63553209)
               

               
               85-256, gnl|Hg17|chr14 (63552942-63553113)
               

               
               85-256, gnl|loxAfr1|scaffold_14360 (18763-18468)
               

               
               85-256, gnl|mm7|chr12 (73895758-73896063)
               

               
               85-256, gnl|Mm7|chr12 (73895787-73895958)
               

               
               85-256, gnl|monDom2|scaffold_8 (77588453-77588743)
               

               
               85-256, gnl|oryCun1|scaffold_191659 (52319-52018)
               

               
               85-256, gnl|panTro1|chr15 (63122021-63122311)
               

               
               85-256, gnl|rheMac2|chr7 (127037868-127038157)
               

               
               85-256, gnl|rn3|chr6 (98551695-98552000)
               

               
               85-256, gnl|xenTro1|scaffold_34 (125980-126299)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-256, gnl|bosTau2|chr10 (52044927-52044756)
               

               
               85-256, gnl|canFam2|chr8 (41496743-41497036)
               

               
               85-256, gnl|echTel1|scaffold_241568 (3198-2904)
               

               
               85-256, gnl|galGal2|chr5 (49928570-49928278)
               

               
               85-256, gnl|hg17|chr14 (63552919-63553209)
               

               
               85-256, gnl|Hg17|chr14 (63552942-63553113)
               

               
               85-256, gnl|loxAfr1|scaffold_14360 (18763-18468)
               

               
               85-256, gnl|mm7|chr12 (73895758-73896063)
               

               
               85-256, gnl|Mm7|chr12 (73895787-73895958)
               

               
               85-256, gnl|monDom2|scaffold_8 (77588453-77588743)
               

               
               85-256, gnl|oryCun1|scaffold_191659 (52319-52018)
               

               
               85-256, gnl|panTro1|chr15 (63122021-63122311)
               

               
               85-256, gnl|rheMac2|chr7 (127037868-127038157)
               

               
               85-256, gnl|rn3|chr6 (98551695-98552000)
               

               
               85-256, gnl|xenTro1|scaffold_34 (125980-126299)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	85-256, gnl\|bosTau2\|chr10 (52044927-52044756)
	85-256, gnl\|canFam2\|chr8 (41496743-41497036)
	85-256, gnl\|echTel1\|scaffold_241568 (3198-2904)
	85-256, gnl\|galGal2\|chr5 (49928570-49928278)
	85-256, gnl\|hg17\|chr14 (63552919-63553209)
	85-256, gnl\|Hg17\|chr14 (63552942-63553113)
	85-256, gnl\|loxAfr1\|scaffold_14360 (18763-18468)
	85-256, gnl\|mm7\|chr12 (73895758-73896063)
	85-256, gnl\|Mm7\|chr12 (73895787-73895958)
	85-256, gnl\|monDom2\|scaffold_8 (77588453-77588743)
	85-256, gnl\|oryCun1\|scaffold_191659 (52319-52018)
	85-256, gnl\|panTro1\|chr15 (63122021-63122311)
	85-256, gnl\|rheMac2\|chr7 (127037868-127038157)
	85-256, gnl\|rn3\|chr6 (98551695-98552000)
	85-256, gnl\|xenTro1\|scaffold_34 (125980-126299)