Non-Coding RNA Search

rplac_17131.y1

Sequence:


               
               CACCACCTTCCGGCGAGGCTTCCAGGTGACAGTACACGTGGGCAATGTGCGTCAGACGGC
AGTGGTGGAAAAGATCCATGCCAAGGACAAGCTGCGGACTGGGGAGAAGGCAGTAGTCCG
TTTCCGCTTCCTGAAGCACCCAGAGTACCTGAAGGTGGGCGCCAAGCTGCTGTTTCGGGA
GGGCGTCACCAAGGGCATCGGCCACGTCACCGATGTGCAAGCCATTGCAGCGGGAGAGGC
CCAGGCCAACATGGCTTTCTGAACTCCTCCAGGCAGGCACGGCTCTACTGCTGTCTCTAC
AATATAGAAGGTGACTTCTGGCCATGCTGCCCCCCCATCGGCGGCTGTGTGTGTCAGTAG
GCTAGGGAGAGAGGGATGCTCTCTGCTGCTTGCTCCTGGCTACCTTTTCTGGAGACATGC
CAGGCTTGATGTGGCCGGGGAGAGGCAGGCCTGGGGGGGAGACGGGAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACCTTCCGGCGAGGCTTCCAGGTGACAGTACACGTGGGCAATGTGCGTCAGACGGC
AGTGGTGGAAAAGATCCATGCCAAGGACAAGCTGCGGACTGGGGAGAAGGCAGTAGTCCG
TTTCCGCTTCCTGAAGCACCCAGAGTACCTGAAGGTGGGCGCCAAGCTGCTGTTTCGGGA
GGGCGTCACCAAGGGCATCGGCCACGTCACCGATGTGCAAGCCATTGCAGCGGGAGAGGC
CCAGGCCAACATGGCTTTCTGAACTCCTCCAGGCAGGCACGGCTCTACTGCTGTCTCTAC
AATATAGAAGGTGACTTCTGGCCATGCTGCCCCCCCATCGGCGGCTGTGTGTGTCAGTAG
GCTAGGGAGAGAGGGATGCTCTCTGCTGCTTGCTCCTGGCTACCTTTTCTGGAGACATGC
CAGGCTTGATGTGGCCGGGGAGAGGCAGGCCTGGGGGGGAGACGGGAGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56789224|gb|AAH88339.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56789224|gb|AAH88339.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               203-322, - strand, RNAz p=0.986636
               

               
               358-470, + strand, RNAz p=0.795875

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-322, - strand, RNAz p=0.986636
               

               
               358-470, + strand, RNAz p=0.795875

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               84-470, gnl|bosTau2|chr23 (16096855-16096469)
               

               
               84-470, gnl|Hg17|chr6 (43697507-43697125)
               

               
               84-470, gnl|Mm7|chr17 (44297548-44297918)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-470, gnl|bosTau2|chr23 (16096855-16096469)
               

               
               84-470, gnl|Hg17|chr6 (43697507-43697125)
               

               
               84-470, gnl|Mm7|chr17 (44297548-44297918)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	203-322, - strand, RNAz p=0.986636
	358-470, + strand, RNAz p=0.795875

	84-470, gnl\|bosTau2\|chr23 (16096855-16096469)
	84-470, gnl\|Hg17\|chr6 (43697507-43697125)
	84-470, gnl\|Mm7\|chr17 (44297548-44297918)