Non-Coding RNA Search

rplac_17217.y1

Sequence:


               
               GAGGAGTGCAGCCACGTTTTTACTGATCCTTTACCCCAACAGAACGAAAAGAGATGCCTT
TTTGCTACTATCACATTACCTTCATATGAACGAGAAATGTAGTTCAAGCTCCACACTTGT
CCTCTCAATAGTCGATCCTTCCTAACCCAGTCCCCAGAGGCTCAAGAAAATTAGGAGGAT
GGGAGTGGGTTCCCAAAAACAGAAAAAGCTTTCCCAAGCACCGCCTTTGCATCCAGTCCA
CCCAAGCTGGTATTTGTATATTAGACATAAAACCGACGTTAGTGGGTGATAACTGAAGCC
CAGGGTATTGTTGACCTGCCTCAAGCCCACGTCCCAGAACCGGCAGGTCCAAGTTCGTGG
TGGGCTCAGAACCCCACAGGGAGCGCGCGCTTTGCCGGGTATCCGGACTAGAGGGCGCTG
CGCCACTGCAGATCACGCGCACCCGATGCGTCCTCCCTGGGCACCATTTCTATAAGTTAC
ATTCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGTGCAGCCACGTTTTTACTGATCCTTTACCCCAACAGAACGAAAAGAGATGCCTT
TTTGCTACTATCACATTACCTTCATATGAACGAGAAATGTAGTTCAAGCTCCACACTTGT
CCTCTCAATAGTCGATCCTTCCTAACCCAGTCCCCAGAGGCTCAAGAAAATTAGGAGGAT
GGGAGTGGGTTCCCAAAAACAGAAAAAGCTTTCCCAAGCACCGCCTTTGCATCCAGTCCA
CCCAAGCTGGTATTTGTATATTAGACATAAAACCGACGTTAGTGGGTGATAACTGAAGCC
CAGGGTATTGTTGACCTGCCTCAAGCCCACGTCCCAGAACCGGCAGGTCCAAGTTCGTGG
TGGGCTCAGAACCCCACAGGGAGCGCGCGCTTTGCCGGGTATCCGGACTAGAGGGCGCTG
CGCCACTGCAGATCACGCGCACCCGATGCGTCCTCCCTGGGCACCATTTCTATAAGTTAC
ATTCGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-194, - strand, RNAz p=0.5257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-194, - strand, RNAz p=0.5257

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               6-199, gnl|bosTau2|chr27 (5283498-5283301)
               

               
               6-199, gnl|canFam2|chr16 (47076523-47075452)
               

               
               6-199, gnl|hg17|chr4 (188021428-188022512)
               

               
               6-199, gnl|Hg17|chr4 (188021913-188022113)
               

               
               6-199, gnl|loxAfr1|scaffold_15710 (5999-4973)
               

               
               6-199, gnl|mm7|chr8 (43722396-43721320)
               

               
               6-199, gnl|Mm7|chr8 (43721921-43721731)
               

               
               6-199, gnl|monDom2|scaffold_9 (69347439-69348614)
               

               
               6-199, gnl|oryCun1|scaffold_185235 (1241-183)
               

               
               6-199, gnl|panTro1|chr3 (206246889-206247973)
               

               
               6-199, gnl|rheMac2|chr5 (178840094-178841174)
               

               
               6-199, gnl|rn3|chr16 (50590007-50591155)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-199, gnl|bosTau2|chr27 (5283498-5283301)
               

               
               6-199, gnl|canFam2|chr16 (47076523-47075452)
               

               
               6-199, gnl|hg17|chr4 (188021428-188022512)
               

               
               6-199, gnl|Hg17|chr4 (188021913-188022113)
               

               
               6-199, gnl|loxAfr1|scaffold_15710 (5999-4973)
               

               
               6-199, gnl|mm7|chr8 (43722396-43721320)
               

               
               6-199, gnl|Mm7|chr8 (43721921-43721731)
               

               
               6-199, gnl|monDom2|scaffold_9 (69347439-69348614)
               

               
               6-199, gnl|oryCun1|scaffold_185235 (1241-183)
               

               
               6-199, gnl|panTro1|chr3 (206246889-206247973)
               

               
               6-199, gnl|rheMac2|chr5 (178840094-178841174)
               

               
               6-199, gnl|rn3|chr16 (50590007-50591155)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	6-199, gnl\|bosTau2\|chr27 (5283498-5283301)
	6-199, gnl\|canFam2\|chr16 (47076523-47075452)
	6-199, gnl\|hg17\|chr4 (188021428-188022512)
	6-199, gnl\|Hg17\|chr4 (188021913-188022113)
	6-199, gnl\|loxAfr1\|scaffold_15710 (5999-4973)
	6-199, gnl\|mm7\|chr8 (43722396-43721320)
	6-199, gnl\|Mm7\|chr8 (43721921-43721731)
	6-199, gnl\|monDom2\|scaffold_9 (69347439-69348614)
	6-199, gnl\|oryCun1\|scaffold_185235 (1241-183)
	6-199, gnl\|panTro1\|chr3 (206246889-206247973)
	6-199, gnl\|rheMac2\|chr5 (178840094-178841174)
	6-199, gnl\|rn3\|chr16 (50590007-50591155)