Non-Coding RNA Search

rplac_1753.y1

Sequence:


               
               TCCCGGGCATTAAAGCGGGCCAACTTCTGTCGCCCCTGATTCCGTGTGGCTGAGTACTCA
GGGTTAACAGGCAGGAAGGGCACAGCGCTGCGCTCCGTCACCAGGGTGCTGTGGTTTTGG
GTCGCCAGCCACACAGCGTCATTTTCTCTTCGATCCACCTCGTCATACACATCCATGGCA
AGTTCCTCAAAAAGCCGGTTGCTGAGCGCTTGTAACTTCTTCTTGGCAGCTTTGGCCAAC
TCGGACAGGTCCAGGCTGTCAGCCATCTGGGGGATGATGTAATGCCCATTCTTGTGATCC
GGCTTTCGTCCACAGAGATAGAAGGCCAACCGGTCAGTGAGCTCATACTGGCACTCGACT
AGCCTTTCTGCCAGCTCATGGTGCCCCGCCTGCCTGGCATAGTCAATGGGTGTGCGGCCG
TTGACGTCGGGGGAGCCAGGGTCCGCACCGTACACTACAAGAAGCTCGGCCTGCAGCGTC
TGCCCCGCCTTGGCAGCCACGTGCAGAGGTGTGGTGCCCTTCTCTGGGTGGAAGAAGTTG
GCCTGGGCACCCAGGGACAGCAGGCGCAGACACGTCTCCAGGTTGCCTGTCCGAACGCTT
GAGTGCAGTTGCTTGCTGAGGTCTTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGGCATTAAAGCGGGCCAACTTCTGTCGCCCCTGATTCCGTGTGGCTGAGTACTCA
GGGTTAACAGGCAGGAAGGGCACAGCGCTGCGCTCCGTCACCAGGGTGCTGTGGTTTTGG
GTCGCCAGCCACACAGCGTCATTTTCTCTTCGATCCACCTCGTCATACACATCCATGGCA
AGTTCCTCAAAAAGCCGGTTGCTGAGCGCTTGTAACTTCTTCTTGGCAGCTTTGGCCAAC
TCGGACAGGTCCAGGCTGTCAGCCATCTGGGGGATGATGTAATGCCCATTCTTGTGATCC
GGCTTTCGTCCACAGAGATAGAAGGCCAACCGGTCAGTGAGCTCATACTGGCACTCGACT
AGCCTTTCTGCCAGCTCATGGTGCCCCGCCTGCCTGGCATAGTCAATGGGTGTGCGGCCG
TTGACGTCGGGGGAGCCAGGGTCCGCACCGTACACTACAAGAAGCTCGGCCTGCAGCGTC
TGCCCCGCCTTGGCAGCCACGTGCAGAGGTGTGGTGCCCTTCTCTGGGTGGAAGAAGTTG
GCCTGGGCACCCAGGGACAGCAGGCGCAGACACGTCTCCAGGTTGCCTGTCCGAACGCTT
GAGTGCAGTTGCTTGCTGAGGTCTTTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               472-591, + strand, RNAz p=0.995459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-591, + strand, RNAz p=0.995459

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               492-587, + strand, RNAmicro p=0.999682

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               492-587, + strand, RNAmicro p=0.999682

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               393-613, gnl|bosTau2|chr19 (14057116-14056896)
               

               
               393-613, gnl|Hg17|chr17 (24933070-24933290)
               

               
               393-613, gnl|Mm7|chr11 (77582141-77581921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-613, gnl|bosTau2|chr19 (14057116-14056896)
               

               
               393-613, gnl|Hg17|chr17 (24933070-24933290)
               

               
               393-613, gnl|Mm7|chr11 (77582141-77581921)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	393-613, gnl\|bosTau2\|chr19 (14057116-14056896)
	393-613, gnl\|Hg17\|chr17 (24933070-24933290)
	393-613, gnl\|Mm7\|chr11 (77582141-77581921)