Non-Coding RNA Search

rplac_17692.y1

Sequence:


               
               CTTCAGTGAAAGGGACACAGATTGCCAGCGTGGACTGGAGGGACTCTAGCACCGAGGGGC
CTCTCAAGCAGGGGGCTGTCTCGAGCCAGCCTGTGCCCTTGCCAGCCTTGGGTGCCACAG
AGAAGCTGGGCCTCGAGATGGGCAAAGTGCCACCCCCGATCCCTGGCGTTGGCAAGCAGC
CGCCCCCAAGCTATGGGACATACCCGAGTCCTGCGCCCGTGGGCCCAGGCTCGACCAACT
CCCTGGAGAGGAGGAAGGAGGGCAGCTTGCCCAGGCCCAGCACAGGCCTGCCCAGTCGAC
AGAAACCTGCCCCGCTGCCCCCTGCGGGCAGCCCCCACCCACCGGGTTCCTCGCAGCAGA
TCCAGCAGAGAATTTCTGTGCCACCAAGTCCCACGTACCCGCCAGCAGGGCTGCCTGCAT
TTCCAGCTGGAGACGGCAAACCTGAACTCCCACTGACTGTGGCCATTAGGCCTTTTCTGG
CTGATAAAGGATCAAGGCCACAGTCCCCCAGGAAAGGACCCCAGACAGTGAATTCAAGCT
CCATATACTCCATGTACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGTGAAAGGGACACAGATTGCCAGCGTGGACTGGAGGGACTCTAGCACCGAGGGGC
CTCTCAAGCAGGGGGCTGTCTCGAGCCAGCCTGTGCCCTTGCCAGCCTTGGGTGCCACAG
AGAAGCTGGGCCTCGAGATGGGCAAAGTGCCACCCCCGATCCCTGGCGTTGGCAAGCAGC
CGCCCCCAAGCTATGGGACATACCCGAGTCCTGCGCCCGTGGGCCCAGGCTCGACCAACT
CCCTGGAGAGGAGGAAGGAGGGCAGCTTGCCCAGGCCCAGCACAGGCCTGCCCAGTCGAC
AGAAACCTGCCCCGCTGCCCCCTGCGGGCAGCCCCCACCCACCGGGTTCCTCGCAGCAGA
TCCAGCAGAGAATTTCTGTGCCACCAAGTCCCACGTACCCGCCAGCAGGGCTGCCTGCAT
TTCCAGCTGGAGACGGCAAACCTGAACTCCCACTGACTGTGGCCATTAGGCCTTTTCTGG
CTGATAAAGGATCAAGGCCACAGTCCCCCAGGAAAGGACCCCAGACAGTGAATTCAAGCT
CCATATACTCCATGTACCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               168-287, - strand, RNAz p=0.829613
               

               
               368-560, - strand, RNAz p=0.98268

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-287, - strand, RNAz p=0.829613
               

               
               368-560, - strand, RNAz p=0.98268

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               188-294, - strand, RNAmicro p=0.999933

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               188-294, - strand, RNAmicro p=0.999933

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               372-560, AV609992 Bos taurus lung fetus Bos taurus cDNA clone E1LU029F03 3', 
(dbj|AV609992.1|), blast E-value=0, identity=92.59% 
               

               
               384-560, 603053121F1 NIH_MGC_122 Homo sapiens cDNA clone IMAGE (gb|BI766885.1|), 
blast E-value=0, identity=93.22% 
               

               
               384-560, UI-HF-CB0-apa-d-09-0-UI.r1 NIH_MGC_210 Homo sapiens cDNA clone 
(gb|CF139725.1|), blast E-value=0, identity=93.22% 
               

               
               372-560, 970637 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847940.1|), 
blast E-value=0, identity=92.59% 
               

               
               372-560, UMC-bconb_0A01-011-b06 Blastocysts & Conceptus bconb Bos taurus 
(gb|DN637907.1|), blast E-value=0, identity=92.59% 
               

               
               372-560, PADT0811002_I21F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB411950.1|), blast E-value=0, identity=98.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               372-560, AV609992 Bos taurus lung fetus Bos taurus cDNA clone E1LU029F03 3', 
(dbj|AV609992.1|), blast E-value=0, identity=92.59% 
               

               
               384-560, 603053121F1 NIH_MGC_122 Homo sapiens cDNA clone IMAGE (gb|BI766885.1|), 
blast E-value=0, identity=93.22% 
               

               
               384-560, UI-HF-CB0-apa-d-09-0-UI.r1 NIH_MGC_210 Homo sapiens cDNA clone 
(gb|CF139725.1|), blast E-value=0, identity=93.22% 
               

               
               372-560, 970637 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847940.1|), 
blast E-value=0, identity=92.59% 
               

               
               372-560, UMC-bconb_0A01-011-b06 Blastocysts & Conceptus bconb Bos taurus 
(gb|DN637907.1|), blast E-value=0, identity=92.59% 
               

               
               372-560, PADT0811002_I21F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB411950.1|), blast E-value=0, identity=98.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               128-560, gnl|bosTau2|chr21 (48583103-48582671)
               

               
               128-560, gnl|Hg17|chr14 (103278382-103277950)
               

               
               128-560, gnl|Mm7|chr12 (109360249-109359817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-560, gnl|bosTau2|chr21 (48583103-48582671)
               

               
               128-560, gnl|Hg17|chr14 (103278382-103277950)
               

               
               128-560, gnl|Mm7|chr12 (109360249-109359817)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	168-287, - strand, RNAz p=0.829613
	368-560, - strand, RNAz p=0.98268

	372-560, AV609992 Bos taurus lung fetus Bos taurus cDNA clone E1LU029F03 3', (dbj\|AV609992.1\|), blast E-value=0, identity=92.59%
	384-560, 603053121F1 NIH_MGC_122 Homo sapiens cDNA clone IMAGE (gb\|BI766885.1\|), blast E-value=0, identity=93.22%
	384-560, UI-HF-CB0-apa-d-09-0-UI.r1 NIH_MGC_210 Homo sapiens cDNA clone (gb\|CF139725.1\|), blast E-value=0, identity=93.22%
	372-560, 970637 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK847940.1\|), blast E-value=0, identity=92.59%
	372-560, UMC-bconb_0A01-011-b06 Blastocysts & Conceptus bconb Bos taurus (gb\|DN637907.1\|), blast E-value=0, identity=92.59%
	372-560, PADT0811002_I21F porcine adipose tissue cDNA library (PADT) Sus (gb\|EB411950.1\|), blast E-value=0, identity=98.94%

	128-560, gnl\|bosTau2\|chr21 (48583103-48582671)
	128-560, gnl\|Hg17\|chr14 (103278382-103277950)
	128-560, gnl\|Mm7\|chr12 (109360249-109359817)