Non-Coding RNA Search

rplac_18067.y1

Sequence:


               
               AAATAGTTTTAACAAGGGTGGATACTGCTCCTTTAAACCACATATTTTGACTAAAAGCTT
CCTTCTGTAAAAAAAAAAAAAAACCCAAGCCTTGCATTTAGTTACCATCAAGACAGGCAG
AACTGGAAGCATTTGCGAGATGGGTGGTTTCAAGGTCTCTGCGAGTCTAGAAAGTTTCTT
CTAGAGGAAAACGATCCGTGGAAGATGTAAGATGCAGAGAGAACTTGTTTATGCAAGAGG
AGATGGCCCTGGTGCCTCTCGACCAGGACCTTCCGCTGCACCCCACGCCATTCCAAATTC
TCCCCCGTCCACTCCTGTGCCCCATTCCATGCCTCCCTCCCCATCCAGAATCCCTTATGG
AGGCACCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAGTTTTAACAAGGGTGGATACTGCTCCTTTAAACCACATATTTTGACTAAAAGCTT
CCTTCTGTAAAAAAAAAAAAAAACCCAAGCCTTGCATTTAGTTACCATCAAGACAGGCAG
AACTGGAAGCATTTGCGAGATGGGTGGTTTCAAGGTCTCTGCGAGTCTAGAAAGTTTCTT
CTAGAGGAAAACGATCCGTGGAAGATGTAAGATGCAGAGAGAACTTGTTTATGCAAGAGG
AGATGGCCCTGGTGCCTCTCGACCAGGACCTTCCGCTGCACCCCACGCCATTCCAAATTC
TCCCCCGTCCACTCCTGTGCCCCATTCCATGCCTCCCTCCCCATCCAGAATCCCTTATGG
AGGCACCCG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-211, gnl|bosTau2|chr13 (11945150-11944937)
               

               
               1-211, gnl|canFam2|chr2 (11881506-11881240)
               

               
               1-211, gnl|dasNov1|scaffold_11841 (76513-76791)
               

               
               1-211, gnl|echTel1|scaffold_286316 (11595-11866)
               

               
               1-211, gnl|galGal2|chr2 (16326339-16326101)
               

               
               1-211, gnl|hg17|chr10 (24778407-24778670)
               

               
               1-211, gnl|Hg17|chr10 (24778498-24778699)
               

               
               1-211, gnl|mm7|chr2 (20787595-20787853)
               

               
               1-211, gnl|Mm7|chr2 (20787681-20787882)
               

               
               1-211, gnl|monDom2|scaffold_7 (44183949-44183669)
               

               
               1-211, gnl|panTro1|chr8 (25029530-25029793)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr13 (11945150-11944937)
               

               
               1-211, gnl|canFam2|chr2 (11881506-11881240)
               

               
               1-211, gnl|dasNov1|scaffold_11841 (76513-76791)
               

               
               1-211, gnl|echTel1|scaffold_286316 (11595-11866)
               

               
               1-211, gnl|galGal2|chr2 (16326339-16326101)
               

               
               1-211, gnl|hg17|chr10 (24778407-24778670)
               

               
               1-211, gnl|Hg17|chr10 (24778498-24778699)
               

               
               1-211, gnl|mm7|chr2 (20787595-20787853)
               

               
               1-211, gnl|Mm7|chr2 (20787681-20787882)
               

               
               1-211, gnl|monDom2|scaffold_7 (44183949-44183669)
               

               
               1-211, gnl|panTro1|chr8 (25029530-25029793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-211, gnl\|bosTau2\|chr13 (11945150-11944937)
	1-211, gnl\|canFam2\|chr2 (11881506-11881240)
	1-211, gnl\|dasNov1\|scaffold_11841 (76513-76791)
	1-211, gnl\|echTel1\|scaffold_286316 (11595-11866)
	1-211, gnl\|galGal2\|chr2 (16326339-16326101)
	1-211, gnl\|hg17\|chr10 (24778407-24778670)
	1-211, gnl\|Hg17\|chr10 (24778498-24778699)
	1-211, gnl\|mm7\|chr2 (20787595-20787853)
	1-211, gnl\|Mm7\|chr2 (20787681-20787882)
	1-211, gnl\|monDom2\|scaffold_7 (44183949-44183669)
	1-211, gnl\|panTro1\|chr8 (25029530-25029793)