Non-Coding RNA Search

rplac_18114.y1

Sequence:


               
               GTCTTAATAATCTAAAGAGTCAGATTATGTAAAAATGAGACCTTCTGAGGACTTTGCATT
TAAATATTTATATTTTTGTACCAAGTGATTGCTAATACATTAATATACTTGTTAGCTAAG
TAATGGAAAATAGCTTGTTAGGTGGTCTGTGCTTATTATACTCTTCATTTTTTACATGAG
CATTTGGTGAATGTACAAATAATTTATTGCGTGTTATCCATATAAATATGTGATTATCTT
TGTACATGAGTAAGTATATTTTTGAACTTCTGAAGTAAATTAAATGATAATAAGAAAAGA
GTAATAAAGTCAGGTGAGAGGAAAATAATAGAGGAGGGGCTATAAACCCTGACAAGGCTA
TTTGAATTCCCTGAGACACATCCTGATTACAGTGCTACTTATTTATTTCCTTGAGATTTA
GCTAACGGGAAGGTGGCTTGTTACAGGAGCAGGGCATGCTGCATGCAAGGACTCTCTGTC
AATCGAAGAATAGCCTCCAGGATGAGAAAAACAAGTTGTCCTCTTAACAGCTCTTGGAGA
GGATGCCACATTGTATCATGGCAGTAGAATTACATGGACTGCTCTTTGAGAATAGGGGAT
TGAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTAATAATCTAAAGAGTCAGATTATGTAAAAATGAGACCTTCTGAGGACTTTGCATT
TAAATATTTATATTTTTGTACCAAGTGATTGCTAATACATTAATATACTTGTTAGCTAAG
TAATGGAAAATAGCTTGTTAGGTGGTCTGTGCTTATTATACTCTTCATTTTTTACATGAG
CATTTGGTGAATGTACAAATAATTTATTGCGTGTTATCCATATAAATATGTGATTATCTT
TGTACATGAGTAAGTATATTTTTGAACTTCTGAAGTAAATTAAATGATAATAAGAAAAGA
GTAATAAAGTCAGGTGAGAGGAAAATAATAGAGGAGGGGCTATAAACCCTGACAAGGCTA
TTTGAATTCCCTGAGACACATCCTGATTACAGTGCTACTTATTTATTTCCTTGAGATTTA
GCTAACGGGAAGGTGGCTTGTTACAGGAGCAGGGCATGCTGCATGCAAGGACTCTCTGTC
AATCGAAGAATAGCCTCCAGGATGAGAAAAACAAGTTGTCCTCTTAACAGCTCTTGGAGA
GGATGCCACATTGTATCATGGCAGTAGAATTACATGGACTGCTCTTTGAGAATAGGGGAT
TGAGAAT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               4-607, gnl|bosTau2|chr20 (10031722-10031138)
               

               
               4-607, gnl|canFam2|chr2 (50868296-50868802)
               

               
               4-607, gnl|hg17|chr5 (60811560-60812082)
               

               
               4-607, gnl|Hg17|chr5 (60811574-60812158)
               

               
               4-607, gnl|loxAfr1|scaffold_14071 (15113-15635)
               

               
               4-607, gnl|mm7|chr13 (104909525-104909043)
               

               
               4-607, gnl|Mm7|chr13 (104909508-104908971)
               

               
               4-607, gnl|monDom2|scaffold_27 (25537937-25538468)
               

               
               4-607, gnl|panTro1|chr4 (55134217-55133693)
               

               
               4-607, gnl|rheMac2|chr6 (59185831-59186360)
               

               
               4-607, gnl|rn3|chr2 (38916075-38915570)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-607, gnl|bosTau2|chr20 (10031722-10031138)
               

               
               4-607, gnl|canFam2|chr2 (50868296-50868802)
               

               
               4-607, gnl|hg17|chr5 (60811560-60812082)
               

               
               4-607, gnl|Hg17|chr5 (60811574-60812158)
               

               
               4-607, gnl|loxAfr1|scaffold_14071 (15113-15635)
               

               
               4-607, gnl|mm7|chr13 (104909525-104909043)
               

               
               4-607, gnl|Mm7|chr13 (104909508-104908971)
               

               
               4-607, gnl|monDom2|scaffold_27 (25537937-25538468)
               

               
               4-607, gnl|panTro1|chr4 (55134217-55133693)
               

               
               4-607, gnl|rheMac2|chr6 (59185831-59186360)
               

               
               4-607, gnl|rn3|chr2 (38916075-38915570)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	4-607, gnl\|bosTau2\|chr20 (10031722-10031138)
	4-607, gnl\|canFam2\|chr2 (50868296-50868802)
	4-607, gnl\|hg17\|chr5 (60811560-60812082)
	4-607, gnl\|Hg17\|chr5 (60811574-60812158)
	4-607, gnl\|loxAfr1\|scaffold_14071 (15113-15635)
	4-607, gnl\|mm7\|chr13 (104909525-104909043)
	4-607, gnl\|Mm7\|chr13 (104909508-104908971)
	4-607, gnl\|monDom2\|scaffold_27 (25537937-25538468)
	4-607, gnl\|panTro1\|chr4 (55134217-55133693)
	4-607, gnl\|rheMac2\|chr6 (59185831-59186360)
	4-607, gnl\|rn3\|chr2 (38916075-38915570)