Non-Coding RNA Search

rplac_18126.y1

Sequence:


               
               CCTGCCTCTTCCTTCCCTTCCCAAGCACTGCTGCCTCAATGCAAGCTCACATCATCTCTT
CCTGAACCATTACCAAACTTTTCCCCCTCACCATCCCACCGTGCCAAAAAAGCATCTGTT
CATGATGCTGCCCAGCTTAAATATCTCCTTGTTTTCCCTTATCCCCAGGATCAGTGCAAG
ACTCTTAGCCACACAAGGCTCTTTCTAAGCTGCAGCCAGCCCCAATTCATCTCCCGCGCC
TACTCAGACACCTGCCATGGCCAGGGACAATTGCCTCCAGGGGACACTTAGCAATGTCTG
GAGATATGGCTGACCGTCACAACTCTGGGGAGGAAAGGACCGATATTATACCATTGGAGT
GGATGTCAGGTTGGGCATGAACACACATCTCCACAGTAGCACCTCTTTTTTGATTAGACA
GAGGCGTGGGATGGAGCAGTATCGAGTGAATTCCTCCAATACACGCATACAGCAGGAGTC
AACCCTTATTAGGGCAGAGGACTCAAGGCCCAGCTTCACGGCCTACCCGGCTATGGCCTA
CTTGGAGATGGTACAGACAGAACCTGTGCAAATGATTAAAGCTCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCTCTTCCTTCCCTTCCCAAGCACTGCTGCCTCAATGCAAGCTCACATCATCTCTT
CCTGAACCATTACCAAACTTTTCCCCCTCACCATCCCACCGTGCCAAAAAAGCATCTGTT
CATGATGCTGCCCAGCTTAAATATCTCCTTGTTTTCCCTTATCCCCAGGATCAGTGCAAG
ACTCTTAGCCACACAAGGCTCTTTCTAAGCTGCAGCCAGCCCCAATTCATCTCCCGCGCC
TACTCAGACACCTGCCATGGCCAGGGACAATTGCCTCCAGGGGACACTTAGCAATGTCTG
GAGATATGGCTGACCGTCACAACTCTGGGGAGGAAAGGACCGATATTATACCATTGGAGT
GGATGTCAGGTTGGGCATGAACACACATCTCCACAGTAGCACCTCTTTTTTGATTAGACA
GAGGCGTGGGATGGAGCAGTATCGAGTGAATTCCTCCAATACACGCATACAGCAGGAGTC
AACCCTTATTAGGGCAGAGGACTCAAGGCCCAGCTTCACGGCCTACCCGGCTATGGCCTA
CTTGGAGATGGTACAGACAGAACCTGTGCAAATGATTAAAGCTCTGGA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-269, gnl|bosTau2|chr10 (54365225-54365506)
               

               
               1-269, gnl|canFam2|chr8 (45564611-45565094)
               

               
               1-269, gnl|dasNov1|scaffold_4398 (113067-112575)
               

               
               1-269, gnl|hg17|chr14 (68190358-68190817)
               

               
               1-269, gnl|Hg17|chr14 (68190631-68190367)
               

               
               1-269, gnl|loxAfr1|scaffold_4750 (69113-68646)
               

               
               1-269, gnl|mm7|chr12 (77951220-77951639)
               

               
               1-269, gnl|panTro1|chr15 (67845483-67845942)
               

               
               1-269, gnl|rheMac2|chr7 (131759602-131760062)
               

               
               1-269, gnl|rn3|chr6 (103006702-103007130)
               


               
               331-588, gnl|bosTau2|chr10 (54366147-54366407)
               

               
               331-588, gnl|Hg17|chr14 (68189482-68189231)
               

               
               331-588, gnl|Mm7|chr12 (77950636-77950406)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-269, gnl|bosTau2|chr10 (54365225-54365506)
               

               
               1-269, gnl|canFam2|chr8 (45564611-45565094)
               

               
               1-269, gnl|dasNov1|scaffold_4398 (113067-112575)
               

               
               1-269, gnl|hg17|chr14 (68190358-68190817)
               

               
               1-269, gnl|Hg17|chr14 (68190631-68190367)
               

               
               1-269, gnl|loxAfr1|scaffold_4750 (69113-68646)
               

               
               1-269, gnl|mm7|chr12 (77951220-77951639)
               

               
               1-269, gnl|panTro1|chr15 (67845483-67845942)
               

               
               1-269, gnl|rheMac2|chr7 (131759602-131760062)
               

               
               1-269, gnl|rn3|chr6 (103006702-103007130)
               


               
               331-588, gnl|bosTau2|chr10 (54366147-54366407)
               

               
               331-588, gnl|Hg17|chr14 (68189482-68189231)
               

               
               331-588, gnl|Mm7|chr12 (77950636-77950406)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-269, gnl\|bosTau2\|chr10 (54365225-54365506)
	1-269, gnl\|canFam2\|chr8 (45564611-45565094)
	1-269, gnl\|dasNov1\|scaffold_4398 (113067-112575)
	1-269, gnl\|hg17\|chr14 (68190358-68190817)
	1-269, gnl\|Hg17\|chr14 (68190631-68190367)
	1-269, gnl\|loxAfr1\|scaffold_4750 (69113-68646)
	1-269, gnl\|mm7\|chr12 (77951220-77951639)
	1-269, gnl\|panTro1\|chr15 (67845483-67845942)
	1-269, gnl\|rheMac2\|chr7 (131759602-131760062)
	1-269, gnl\|rn3\|chr6 (103006702-103007130)

	331-588, gnl\|bosTau2\|chr10 (54366147-54366407)
	331-588, gnl\|Hg17\|chr14 (68189482-68189231)
	331-588, gnl\|Mm7\|chr12 (77950636-77950406)