Non-Coding RNA Search

rplac_2679.y1

Sequence:


               
               GAGGGTGGATAGGAAAGACAGGAGGACAGACAGGCATCAGCGACGGCAGGTCCCCGACCC
GGACCCCTTCCAGGCATTCCAGGAATGGAGGGAGGGGCCCGTGACATCACCTTCTCACTT
AACAGGCAGGGCCCTCCCTTCTTCCAGAACCCAGGAGGAGCCACTTTCCCTGACCCACCC
ACCCCGTCTCTGACAAGTGGCTTCACACCTCCCAGGAAAGCCCAAGCCCTCTTTCCCCAC
ACCCTGGACCCCAATTCCCCTGCGAGTCTCCCTCCTGAACCCTAACATCCTTCCCCTGTT
CTAAGATGGGAGGCAGGGGCTTGTGTCCTTGAGCAGAAGATGGTCCAGGTGGAAATATCC
AGGACCCGTGGCTGGGGAGAAGGGATGAGGGACAGGGATAGGGAGACAGGAAGCTGCAGC
CCAGGCATTTGCTAAGAGAACGCAATTTTGGTAGGGGGCCTGTTAAAGCGCTTAGCACTT
CTGCCCCACGCTTGCCCCGCTGAGTTGTTTACACGCCTGGCTCCTCCACTAGACTGGGTG
CTCCTGAAGGCCGGGCTTCATTCTCTTTGCATCCTGGGTGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTGGATAGGAAAGACAGGAGGACAGACAGGCATCAGCGACGGCAGGTCCCCGACCC
GGACCCCTTCCAGGCATTCCAGGAATGGAGGGAGGGGCCCGTGACATCACCTTCTCACTT
AACAGGCAGGGCCCTCCCTTCTTCCAGAACCCAGGAGGAGCCACTTTCCCTGACCCACCC
ACCCCGTCTCTGACAAGTGGCTTCACACCTCCCAGGAAAGCCCAAGCCCTCTTTCCCCAC
ACCCTGGACCCCAATTCCCCTGCGAGTCTCCCTCCTGAACCCTAACATCCTTCCCCTGTT
CTAAGATGGGAGGCAGGGGCTTGTGTCCTTGAGCAGAAGATGGTCCAGGTGGAAATATCC
AGGACCCGTGGCTGGGGAGAAGGGATGAGGGACAGGGATAGGGAGACAGGAAGCTGCAGC
CCAGGCATTTGCTAAGAGAACGCAATTTTGGTAGGGGGCCTGTTAAAGCGCTTAGCACTT
CTGCCCCACGCTTGCCCCGCTGAGTTGTTTACACGCCTGGCTCCTCCACTAGACTGGGTG
CTCCTGAAGGCCGGGCTTCATTCTCTTTGCATCCTGGGTGCTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-388, + strand, RNAz p=0.999998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-388, + strand, RNAz p=0.999998

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               88-160, + strand, RNAmicro p=0.992013
               

               
               15-133, - strand, RNAmicro p=0.916424

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               88-160, + strand, RNAmicro p=0.992013
               

               
               15-133, - strand, RNAmicro p=0.916424

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-585, gnl|bosTau2|chr23 (17531455-17532035)
               

               
               5-585, gnl|Hg17|chr6 (44348398-44347730)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-585, gnl|bosTau2|chr23 (17531455-17532035)
               

               
               5-585, gnl|Hg17|chr6 (44348398-44347730)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	88-160, + strand, RNAmicro p=0.992013
	15-133, - strand, RNAmicro p=0.916424

	5-585, gnl\|bosTau2\|chr23 (17531455-17532035)
	5-585, gnl\|Hg17\|chr6 (44348398-44347730)