Non-Coding RNA Search

rplac_3204.y1

Sequence:


               
               ATGACAGCGTCTTTAAACAGGAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTCG
ACTCCGCATACGGAGCGGCGGCCCATCTCCCCAAGGCCGACATGACCGCCTCAGGGAGTC
CAGACTACGGCCAGCCCCACAAGATCAACCCGCTCCCCCCGCAGCAGGAGTGGATCAACC
AGCCAGTGAGGGTCAATGTCAAGCGGGAGTACGACCACATGAATGGATCCAGGGAGTCTC
CGGTGGACTGCAGCGTTAGCAAATGCGGCAAGCTAGTGGGCGGAGGCGAGTCCAACGCCA
TGAGCTACAACAGCTACATGGATGAGAAGAACGGCCCCCCTCCCCCCAACATGACCACCA
ACGAGAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGACAGCGTCTTTAAACAGGAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTCG
ACTCCGCATACGGAGCGGCGGCCCATCTCCCCAAGGCCGACATGACCGCCTCAGGGAGTC
CAGACTACGGCCAGCCCCACAAGATCAACCCGCTCCCCCCGCAGCAGGAGTGGATCAACC
AGCCAGTGAGGGTCAATGTCAAGCGGGAGTACGACCACATGAATGGATCCAGGGAGTCTC
CGGTGGACTGCAGCGTTAGCAAATGCGGCAAGCTAGTGGGCGGAGGCGAGTCCAACGCCA
TGAGCTACAACAGCTACATGGATGAGAAGAACGGCCCCCCTCCCCCCAACATGACCACCA
ACGAGAGGAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               53-172, - strand, RNAz p=0.550315
               

               
               70-184, - strand, RNAz p=0.569907

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-172, - strand, RNAz p=0.550315
               

               
               70-184, - strand, RNAz p=0.569907

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               18-248, gnl|bosTau2|chr10 (46828025-46827796)
               

               
               18-248, gnl|canFam2|chr5 (8899169-8898992)
               

               
               18-248, gnl|danRer3|chr18 (48918573-48918766)
               

               
               18-248, gnl|dasNov1|scaffold_22815 (1761-1944)
               

               
               18-248, gnl|echTel1|scaffold_300021 (6079-6234)
               

               
               18-248, gnl|fr1|chrUn (10217936-10218107)
               

               
               18-248, gnl|galGal2|chr24 (1016277-1016448)
               

               
               18-248, gnl|hg17|chr11 (128133190-128133366)
               

               
               18-248, gnl|Hg17|chr11 (128133217-128133446)
               

               
               18-248, gnl|loxAfr1|scaffold_54654 (4994-5161)
               

               
               18-248, gnl|mm7|chr9 (32378136-32377960)
               

               
               18-248, gnl|Mm7|chr9 (32378113-32377878)
               

               
               18-248, gnl|monDom2|scaffold_15 (16978970-16979146)
               

               
               18-248, gnl|oryCun1|scaffold_207683 (68296-68472)
               

               
               18-248, gnl|rheMac2|chr14 (126889573-126889749)
               

               
               18-248, gnl|rn3|chr8 (32254375-32254199)
               

               
               18-248, gnl|tetNig1|chrUn_random (14242780-14242941)
               

               
               18-248, gnl|xenTro1|scaffold_383 (967591-967410)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-248, gnl|bosTau2|chr10 (46828025-46827796)
               

               
               18-248, gnl|canFam2|chr5 (8899169-8898992)
               

               
               18-248, gnl|danRer3|chr18 (48918573-48918766)
               

               
               18-248, gnl|dasNov1|scaffold_22815 (1761-1944)
               

               
               18-248, gnl|echTel1|scaffold_300021 (6079-6234)
               

               
               18-248, gnl|fr1|chrUn (10217936-10218107)
               

               
               18-248, gnl|galGal2|chr24 (1016277-1016448)
               

               
               18-248, gnl|hg17|chr11 (128133190-128133366)
               

               
               18-248, gnl|Hg17|chr11 (128133217-128133446)
               

               
               18-248, gnl|loxAfr1|scaffold_54654 (4994-5161)
               

               
               18-248, gnl|mm7|chr9 (32378136-32377960)
               

               
               18-248, gnl|Mm7|chr9 (32378113-32377878)
               

               
               18-248, gnl|monDom2|scaffold_15 (16978970-16979146)
               

               
               18-248, gnl|oryCun1|scaffold_207683 (68296-68472)
               

               
               18-248, gnl|rheMac2|chr14 (126889573-126889749)
               

               
               18-248, gnl|rn3|chr8 (32254375-32254199)
               

               
               18-248, gnl|tetNig1|chrUn_random (14242780-14242941)
               

               
               18-248, gnl|xenTro1|scaffold_383 (967591-967410)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	53-172, - strand, RNAz p=0.550315
	70-184, - strand, RNAz p=0.569907

	18-248, gnl\|bosTau2\|chr10 (46828025-46827796)
	18-248, gnl\|canFam2\|chr5 (8899169-8898992)
	18-248, gnl\|danRer3\|chr18 (48918573-48918766)
	18-248, gnl\|dasNov1\|scaffold_22815 (1761-1944)
	18-248, gnl\|echTel1\|scaffold_300021 (6079-6234)
	18-248, gnl\|fr1\|chrUn (10217936-10218107)
	18-248, gnl\|galGal2\|chr24 (1016277-1016448)
	18-248, gnl\|hg17\|chr11 (128133190-128133366)
	18-248, gnl\|Hg17\|chr11 (128133217-128133446)
	18-248, gnl\|loxAfr1\|scaffold_54654 (4994-5161)
	18-248, gnl\|mm7\|chr9 (32378136-32377960)
	18-248, gnl\|Mm7\|chr9 (32378113-32377878)
	18-248, gnl\|monDom2\|scaffold_15 (16978970-16979146)
	18-248, gnl\|oryCun1\|scaffold_207683 (68296-68472)
	18-248, gnl\|rheMac2\|chr14 (126889573-126889749)
	18-248, gnl\|rn3\|chr8 (32254375-32254199)
	18-248, gnl\|tetNig1\|chrUn_random (14242780-14242941)
	18-248, gnl\|xenTro1\|scaffold_383 (967591-967410)