rplac_3774.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTACGACATCTTCCTTGAGATGATGGAGGCGCGCAGCCGAGGCCACGCGTCCCGCCGGC CGCCAACGGGCAGAGCCCATCATCCGGCTCCCAGTCTCCTGTGGTGCCTCCGAGCGCAGT GTCCACAGGGAGCTCCAGCCCTGGCACGCCCCAGCCGGCACCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTACGACATCTTCCTTGAGATGATGGAGGCGCGCAGCCGAGGCCACGCGTCCCGCCGGC CGCCAACGGGCAGAGCCCATCATCCGGCTCCCAGTCTCCTGTGGTGCCTCCGAGCGCAGT GTCCACAGGGAGCTCCAGCCCTGGCACGCCCCAGCCGGCACCCCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 8-103, + strand, RNAz p=0.885149 | |
| 40-156, - strand, RNAz p=0.72233 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-103, + strand, RNAz p=0.885149 | |
| 40-156, - strand, RNAz p=0.72233 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 8-158, gnl|bosTau2|chr11 (86208460-86208611) | |
| 8-158, gnl|canFam2|chr9 (52082089-52082417) | |
| 8-158, gnl|canFam2|chr9 (52082088-52082417) | |
| 8-158, gnl|canFam2|chr9 (52082423-52082100) | |
| 8-158, gnl|danRer3|chrNA (34648628-34648934) | |
| 8-158, gnl|danRer3|chrNA (34648645-34648934) | |
| 8-158, gnl|danRer3|chrNA (34648934-34648647) | |
| 8-158, gnl|fr1|chrUn (243476401-243476028) | |
| 8-158, gnl|fr1|chrUn (243476401-243476028) | |
| 8-158, gnl|fr1|chrUn (243476031-243476401) | |
| 8-158, gnl|galGal2|chr17 (10254980-10254599) | |
| 8-158, gnl|galGal2|chr17 (10254980-10254599) | |
| 8-158, gnl|galGal2|chr17 (10254594-10254971) | |
| 8-158, gnl|hg17|chr18 (14995851-14996197) | |
| 8-158, gnl|hg17|chr2 (132427327-132427673) | |
| 8-158, gnl|hg17|chr9 (137007621-137007954) | |
| 8-158, gnl|Hg17|chr9 (137007620-137007783) | |
| 8-158, gnl|mm7|chr2 (25594569-25594953) | |
| 8-158, gnl|mm7|chr2 (25594569-25594953) | |
| 8-158, gnl|mm7|chr2 (25594956-25594585) | |
| 8-158, gnl|Mm7|chr2 (25594941-25594790) | |
| 8-158, gnl|monDom2|scaffold_1 (188610003-188610403) | |
| 8-158, gnl|monDom2|scaffold_1 (188610003-188610403) | |
| 8-158, gnl|monDom2|scaffold_1 (188610411-188610018) | |
| 8-158, gnl|panTro1|chr11 (121769593-121769926) | |
| 8-158, gnl|panTro1|chrUn_random (24848858-24849204) | |
| 8-158, gnl|panTro1|chrUn_random (24848858-24849204) | |
| 8-158, gnl|rheMac2|chr15 (1420668-1421014) | |
| 8-158, gnl|rheMac2|chr15 (1420668-1421014) | |
| 8-158, gnl|rheMac2|chr15 (1421017-1420684) | |
| 8-158, gnl|rn3|chr3 (3758756-3759115) | |
| 8-158, gnl|rn3|chr3 (3758756-3759115) | |
| 8-158, gnl|rn3|chr3 (3759118-3758772) | |
| 8-158, gnl|tetNig1|chrUn_random (20035290-20035669) | |
| 8-158, gnl|tetNig1|chrUn_random (20035290-20035669) | |
| 8-158, gnl|tetNig1|chrUn_random (20035672-20035290) | |
| 8-158, gnl|xenTro1|scaffold_302 (831943-832306) | |
| 8-158, gnl|xenTro1|scaffold_302 (831943-832306) | |
| 8-158, gnl|xenTro1|scaffold_302 (832309-831946) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-158, gnl|bosTau2|chr11 (86208460-86208611) | |
| 8-158, gnl|canFam2|chr9 (52082089-52082417) | |
| 8-158, gnl|canFam2|chr9 (52082088-52082417) | |
| 8-158, gnl|canFam2|chr9 (52082423-52082100) | |
| 8-158, gnl|danRer3|chrNA (34648628-34648934) | |
| 8-158, gnl|danRer3|chrNA (34648645-34648934) | |
| 8-158, gnl|danRer3|chrNA (34648934-34648647) | |
| 8-158, gnl|fr1|chrUn (243476401-243476028) | |
| 8-158, gnl|fr1|chrUn (243476401-243476028) | |
| 8-158, gnl|fr1|chrUn (243476031-243476401) | |
| 8-158, gnl|galGal2|chr17 (10254980-10254599) | |
| 8-158, gnl|galGal2|chr17 (10254980-10254599) | |
| 8-158, gnl|galGal2|chr17 (10254594-10254971) | |
| 8-158, gnl|hg17|chr18 (14995851-14996197) | |
| 8-158, gnl|hg17|chr2 (132427327-132427673) | |
| 8-158, gnl|hg17|chr9 (137007621-137007954) | |
| 8-158, gnl|Hg17|chr9 (137007620-137007783) | |
| 8-158, gnl|mm7|chr2 (25594569-25594953) | |
| 8-158, gnl|mm7|chr2 (25594569-25594953) | |
| 8-158, gnl|mm7|chr2 (25594956-25594585) | |
| 8-158, gnl|Mm7|chr2 (25594941-25594790) | |
| 8-158, gnl|monDom2|scaffold_1 (188610003-188610403) | |
| 8-158, gnl|monDom2|scaffold_1 (188610003-188610403) | |
| 8-158, gnl|monDom2|scaffold_1 (188610411-188610018) | |
| 8-158, gnl|panTro1|chr11 (121769593-121769926) | |
| 8-158, gnl|panTro1|chrUn_random (24848858-24849204) | |
| 8-158, gnl|panTro1|chrUn_random (24848858-24849204) | |
| 8-158, gnl|rheMac2|chr15 (1420668-1421014) | |
| 8-158, gnl|rheMac2|chr15 (1420668-1421014) | |
| 8-158, gnl|rheMac2|chr15 (1421017-1420684) | |
| 8-158, gnl|rn3|chr3 (3758756-3759115) | |
| 8-158, gnl|rn3|chr3 (3758756-3759115) | |
| 8-158, gnl|rn3|chr3 (3759118-3758772) | |
| 8-158, gnl|tetNig1|chrUn_random (20035290-20035669) | |
| 8-158, gnl|tetNig1|chrUn_random (20035290-20035669) | |
| 8-158, gnl|tetNig1|chrUn_random (20035672-20035290) | |
| 8-158, gnl|xenTro1|scaffold_302 (831943-832306) | |
| 8-158, gnl|xenTro1|scaffold_302 (831943-832306) | |
| 8-158, gnl|xenTro1|scaffold_302 (832309-831946) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |